Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq668 138 2e-27 seq47 120 4e-22 seq2136 113 6e-20 seq499 104 3e-17 seq2388 102 1e-16 seq8961 89.7 7e-13 >seq668 Length=57742 Score = 138 bits (152), Expect = 2e-27 Identities = 295/446 (66%), Gaps = 45/446 (10%) Strand=Plus/Minus Query 48122 CAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAA 48181 |||||||| || | |||||| |||||||| | |||||| |||||||| | | |||||| Sbjct 38727 CAAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAA 38668 Query 48182 TTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGC 48241 ||| ||| ||| || || ||||| | || ||||| || |||||||| ||||| || Sbjct 38667 TTCATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGC 38608 Query 48242 GAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTA 48301 ||| |||||| |||||||| || || || || ||||| || |||| | || || | Sbjct 38607 AAAACTTCCAGAGAAGAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACC--A 38550 Query 48302 ACTG--GCTTCGTTGT--GTA-TCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAA 48356 | || ||||| || | | |||| || | ||||||||||| || ||||| | | || Sbjct 38549 AATGAAGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAA 38490 Query 48357 GGCATTGTTTCTATAGCATTAAA---------------GAGAAAGttttt---------- 48391 | |||||||||||| | ||| ||||| Sbjct 38489 TCAAACTCGAATATAGCATTAAACAACTTTGAACTATTAAAAAAATTTTTTTAATCTAAA 38430 Query 48392 -------------ttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTT 48438 |||| | |||||||| |||||||| ||||| |||||||| Sbjct 38429 GAAGGAAATACCGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAATACATTT 38370 Query 48439 CGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCT 48498 | || |||||||||||||| || || |||||||| |||||||| | ||||||| || | Sbjct 38369 CTGAATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCTTCTGGTATTT 38310 Query 48499 GTACCTCCGTACAAAATCGTTCAGCC 48524 | || || | ||| |||||| || Sbjct 38309 GAACTTCTTGAGCAAAACGTTCAACC 38284 >seq47 Length=171977 Score = 120 bits (132), Expect = 4e-22 Identities = 295/451 (65%), Gaps = 50/451 (11%) Strand=Plus/Plus Query 48122 CAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAA 48181 |||||| | || | || ||| |||||||| | |||||| |||||||||| | |||||| Sbjct 33717 CAAATGCTGGAAAAGTAGACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAA 33776 Query 48182 TTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGC 48241 ||| ||| ||| || || ||||| || ||||| || |||||||| ||||| || Sbjct 33777 TTCATTACTTTGTGTCAGTCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGC 33836 Query 48242 GAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTA 48301 ||| |||||| |||||||| || || || || ||||| || | || | || || | Sbjct 33837 AAAACTTCCAGAGAAGAATATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACC--A 33894 Query 48302 ACTG--GCTTCGTTGT--GTA-TCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAA 48356 | || ||||| || | | |||| || | ||||||||||| || ||||| | | || Sbjct 33895 AATGAAGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAA 33954 Query 48357 GGCATTGTTTCTATAGCATTAAAGA-----GAA---------------AGtttttttCAT 48396 | | |||||||||||| | ||| | ||||||| || Sbjct 33955 TCAAATTCGAATATAGCATTAAATAACTTTGAACTATTAAAAAAAAATATTTTTTTTAAT 34014 Query 48397 T----------------GCT-------ATCTTTAACGTAAGTATCTATTAAAAGACTATA 48433 | | | |||||||| |||||||| ||||| ||| Sbjct 34015 TTAAAGAAGGAAATACCGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAATA 34074 Query 48434 CATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGT 48493 |||||| || |||||||||||||| || || |||||||| |||||||| | || |||| Sbjct 34075 CATTTCTGAATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCCTCTGG 34134 Query 48494 GATCTGTACCTCCGTACAAAATCGTTCAGCC 48524 || || || || | ||| |||||| || Sbjct 34135 TATTTGAACTTCTTGAGCAAAACGTTCAACC 34165 >seq2136 Length=23250 Score = 113 bits (124), Expect = 6e-20 Identities = 189/273 (69%), Gaps = 3/273 (1%) Strand=Plus/Minus Query 76811 TGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCT 76870 |||||| | ||| ||||| || ||||| ||||| ||| | |||||||||| Sbjct 13080 TGTACGCAAATAATACATTCCCGTTTTCAGACCATTTTCCCAAGCAAAGAAATGCATTGA 13021 Query 76871 TGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGAT 76930 || | ||| | ||| | ||||| || ||||| | ||| | || |||||||| ||||| Sbjct 13020 GGTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGAT 12961 Query 76931 GAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGT 76990 |||| ||| |||| | |||||||| ||||| ||| ||||||||||||| ||| Sbjct 12960 AAAAGGAGCTCGATCAACTGCCATTTTGATAATTTCACGTTGTGGAATTTCCCAAACAGT 12901 Query 76991 TTTGAAAACTTGTTTGATATCATCTGGAA---GGTTTGTATTTTGAATGGAACCACCATC 77047 |||| | | ||||||||| ||||| | ||||||| | ||||| ||||| Sbjct 12900 TTTGTATAAAGCTTTGATATCTTCTGGCAATCCAACAATATTTTGGACAGAACCTCCATC 12841 Query 77048 TGATATAATTGTATTCTTTATATCATCATTCCA 77080 ||||| | |||||| || | |||| ||| Sbjct 12840 AGATATTAAACGATTCTTCATTTGGTCATCCCA 12808 Score = 95.1 bits (104), Expect = 2e-14 Identities = 193/287 (67%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 78153 TTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATA 78212 ||||| ||||||||||| ||||| | || |||| ||||| |||||| |||||| Sbjct 8678 TTATTTCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATCGGAATA 8619 Query 78213 ATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTA 78272 || || || || |||||||||||||||| || || || || ||||| | | Sbjct 8618 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGA 8559 Query 78273 ATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCG 78332 ||||| | || |||||||| ||| || || || ||| ||||| || | ||| || Sbjct 8558 ATGGAAAGTCCAATTCCTCCAGCCGATTTTGAAATATAAGCACAACGATTAATTGTTTCA 8499 Query 78333 TAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGA 78392 | || || || || || | | ||| ||| | |||||| ||| | ||| || Sbjct 8498 AAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 8439 Query 78393 TGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCA 78439 | || || || || ||||| || ||||| || || |||||||| Sbjct 8438 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 8392 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 78492 TGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTT 78551 || ||||| || || |||||||||||||||||||| || || ||||| || ||| Sbjct 7986 TGTATTCCAACAGCAACACGCATCAACATATGCTGTGGCCTCTCAACTACTTTTCCATTG 7927 Query 78552 ATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTC 78610 ||| ||| | ||| ||| ||| | |||||||| |||||||| | || || ||| || Sbjct 7926 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGGAAA-TC 7868 Query 78611 TCTCTCGTAAATAATAACAGAATTTAGTTT 78640 | || |||||||| || ||||| ||||| Sbjct 7867 ACGATCATAAATAATTACTGAATTGAGTTT 7838 >seq499 Length=68593 Score = 104 bits (114), Expect = 3e-17 Identities = 187/273 (68%), Gaps = 3/273 (1%) Strand=Plus/Plus Query 76811 TGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCT 76870 |||||| | ||| ||||| || ||||| | ||| ||| | |||||||||| Sbjct 9396 TGTACGCAAATAATACATTCCTGTTTTCAAACCATTTTCCCAAGCAAAGAAATGCATTGA 9455 Query 76871 TGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGAT 76930 || | ||| | ||| | ||||| || ||||| | ||| | || |||||||| ||||| Sbjct 9456 GGTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGAT 9515 Query 76931 GAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGT 76990 |||| ||| |||| | |||||||| || || ||| ||||||||||||| ||| Sbjct 9516 AAAAGGAGCTCGATCAACTGCCATTTTAATGATTTCACGTTGTGGAATTTCCCAAACAGT 9575 Query 76991 TTTGAAAACTTGTTTGATATCATCTGGAA---GGTTTGTATTTTGAATGGAACCACCATC 77047 |||| | | ||||||||| ||||| | ||||||| | ||||| ||||| Sbjct 9576 TTTGTATAAAGCTTTGATATCTTCTGGCAATCCAACAATATTTTGGACAGAACCTCCATC 9635 Query 77048 TGATATAATTGTATTCTTTATATCATCATTCCA 77080 ||||| | |||||| || | |||| ||| Sbjct 9636 AGATATTAAACGATTCTTCATTTGGTCATCCCA 9668 >seq2388 Length=20594 Score = 102 bits (112), Expect = 1e-16 Identities = 198/289 (69%), Gaps = 4/289 (1%) Strand=Plus/Plus Query 78153 TTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATA 78212 ||||| ||||||||||| ||||| | || |||| ||||| ||||||||||||| Sbjct 12439 TTATTTCCTCCCTGATCAATATAGCGTGCCACAGAATTAAAAACTTGCAACATTGGAATA 12498 Query 78213 ATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTA 78272 || || || || |||||||||||||||| || || || || ||||| | | Sbjct 12499 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGA 12558 Query 78273 ATGGATATCCCTATTCCTCCTGCC-ATCTT-AGATATTAGAGCGCAACGTTTCAATGTAT 78330 ||||| | || |||||||| ||| || || |||||| ||| ||||| || | ||| | Sbjct 12559 ATGGAAAGTCCAATTCCTCCAGCCGATTTTGAGATAT--AAGCACAACGATTTATTGTTT 12616 Query 78331 CGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGAT 78390 | | || || || || || | | ||| ||| | |||||| ||| | ||| Sbjct 12617 CAAAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTG 12676 Query 78391 GATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCA 78439 || | || || || || ||||| || ||||| || || |||||||| Sbjct 12677 GACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 12725 Score = 98.7 bits (108), Expect = 1e-15 Identities = 186/273 (68%), Gaps = 3/273 (1%) Strand=Plus/Plus Query 76811 TGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCT 76870 |||||| | ||| ||||| || || || ||||| ||| | |||||||||| Sbjct 7894 TGTACGCAAATAATACATTCCTGTCTTGAGACCATTTTCCCAAGCAAAGAAATGCATTGA 7953 Query 76871 TGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGAT 76930 || | ||| | ||| | ||||| || ||||| | ||| | || |||||||| ||||| Sbjct 7954 GGTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGAT 8013 Query 76931 GAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGT 76990 |||| ||| |||| | |||||||| || || || ||||||||||||| ||| Sbjct 8014 AAAAGGAGCTCGATCAACTGCCATTTTAATGATTTCACGCTGTGGAATTTCCCAAACAGT 8073 Query 76991 TTTGAAAACTTGTTTGATATCATCTGGAA---GGTTTGTATTTTGAATGGAACCACCATC 77047 |||| | | ||||||||| ||||| | ||||||| | ||||| ||||| Sbjct 8074 TTTGTATAAAGCTTTGATATCTTCTGGCAATCCAACAATATTTTGGACAGAACCTCCATC 8133 Query 77048 TGATATAATTGTATTCTTTATATCATCATTCCA 77080 ||||| | |||||| || | |||| ||| Sbjct 8134 AGATATTAAACGATTCTTCATTTGGTCATCCCA 8166 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 78492 TGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTT 78551 || ||||| || || |||||||||||||||||||| || || ||||| || ||| Sbjct 13128 TGTATTCCAACAGCAACACGCATCAACATATGCTGTGGCCTCTCAACTACTTTTCCATTG 13187 Query 78552 ATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTC 78610 ||| ||| | ||| ||| ||| | |||||||| |||||||| | || || ||| || Sbjct 13188 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGGAAA-TC 13246 Query 78611 TCTCTCGTAAATAATAACAGAATTTAGTTT 78640 | || |||||||| || ||||| ||||| Sbjct 13247 ACGATCATAAATAATTACTGAATTGAGTTT 13276 >seq8961 Length=3088 Score = 89.7 bits (98), Expect = 7e-13 Identities = 192/287 (67%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 78153 TTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATA 78212 ||||| ||||||||||| ||||| | || |||| ||||| |||||| |||||| Sbjct 2103 TTATTTCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATCGGAATA 2162 Query 78213 ATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTA 78272 || || || || |||||||||||||||| || || || || ||||| | | Sbjct 2163 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGA 2222 Query 78273 ATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCG 78332 || || | || |||||||| ||| || || || ||| ||||| || | ||| || Sbjct 2223 ATAGAAAGTCCAATTCCTCCAGCCGATTTTGAAATATAAGCACAACGATTAATTGTTTCA 2282 Query 78333 TAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGA 78392 | || || || || || | | ||| ||| | |||||| ||| | ||| || Sbjct 2283 AAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 2342 Query 78393 TGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCA 78439 | || || || || ||||| || ||||| || || |||||||| Sbjct 2343 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 2389 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 78492 TGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTT 78551 || ||||| || || |||||||||||||||||||| || || ||||| || ||| Sbjct 2799 TGTATTCCAACAGCAACACGCATCAACATATGCTGTGGCCTCTCAACTACTTTTCCATTG 2858 Query 78552 ATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTC 78610 ||| ||| | ||| ||| ||| | |||||||| |||||||| | || || ||| || Sbjct 2859 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGGAAA-TC 2917 Query 78611 TCTCTCGTAAATAATAACAGAATTTAGTTT 78640 | || |||||||| || ||||| ||||| Sbjct 2918 ACGATCATAAATAATTACTGAATTGAGTTT 2947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694563809494240