Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq668 147 3e-30 seq47 125 1e-23 seq2136 122 1e-22 seq2388 120 4e-22 seq8961 116 5e-21 seq499 109 8e-19 >seq668 Length=57742 Score = 147 bits (162), Expect = 3e-30 Identities = 296/444 (67%), Gaps = 45/444 (10%) Strand=Plus/Minus Query 46610 TCAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTA 46669 ||||||||| || | |||||| |||||||| | |||||| |||||||| | | ||||| Sbjct 38728 TCAAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTA 38669 Query 46670 ATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCG 46729 |||| ||| ||| || |||||||| | || || || || |||||||| || || | Sbjct 38668 ATTCATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAG 38609 Query 46730 CGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGT 46789 | ||| |||||| |||||||| || || || || || || || | ||| | || || Sbjct 38608 CAAAACTTCCAGAGAAGAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACC-- 38551 Query 46790 AACTG--GCATCATTATGAA---TCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACA 46844 || || || || ||| | |||| | ||||||||||||| |||||||| | | | Sbjct 38550 AAATGAAGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAA 38491 Query 46845 AGGCATTGTTTCTATAGCATTAAA---------------GAGAAAGtttttttCATC--- 46886 | | |||||||||||| | ||| ||||||| ||| Sbjct 38490 ATCAAACTCGAATATAGCATTAAACAACTTTGAACTATTAAAAAAATTTTTTTAATCTAA 38431 Query 46887 ----------AC----------TATCTTTAACATATGTATCTATTAAAAGACTATACATT 46926 || |||||||| ||| ||||| ||||| ||||||| Sbjct 38430 AGAAGGAAATACCGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAATACATT 38371 Query 46927 TCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATC 46986 ||||||||||| ||||||||||| || |||||||| |||||||| | ||||| | || Sbjct 38370 TCTGAATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCTTCTGGTATT 38311 Query 46987 TGTACCTCTGTACAAAATCGTTCA 47010 || || ||| | ||| |||||| Sbjct 38310 TGAACTTCTTGAGCAAAACGTTCA 38287 >seq47 Length=171977 Score = 125 bits (138), Expect = 1e-23 Identities = 294/449 (65%), Gaps = 50/449 (11%) Strand=Plus/Plus Query 46610 TCAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTA 46669 ||||||| | || | || ||| |||||||| | |||||| |||||||||| | ||||| Sbjct 33716 TCAAATGCTGGAAAAGTAGACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTA 33775 Query 46670 ATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCG 46729 |||| ||| ||| || |||||||| || || || || |||||||| || || | Sbjct 33776 ATTCATTACTTTGTGTCAGTCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAG 33835 Query 46730 CGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGT 46789 | ||| |||||| |||||||| || || || || || || || | || | || || Sbjct 33836 CAAAACTTCCAGAGAAGAATATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACC-- 33893 Query 46790 AACTG--GCATCATTATGAA---TCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACA 46844 || || || || ||| | |||| | ||||||||||||| |||||||| | | | Sbjct 33894 AAATGAAGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAA 33953 Query 46845 AGGCATTGTTTCTATAGCATTAAAGA-----GAA---------------AGtttttttCA 46884 | | | |||||||||||| | ||| | ||||||| | Sbjct 33954 ATCAAATTCGAATATAGCATTAAATAACTTTGAACTATTAAAAAAAAATATTTTTTTTAA 34013 Query 46885 --------------------TCACT---ATCTTTAACATATGTATCTATTAAAAGACTAT 46921 ||| | |||||||| ||| ||||| ||||| || Sbjct 34014 TTTAAAGAAGGAAATACCGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAAT 34073 Query 46922 ACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 46981 |||||||||||||||| ||||||||||| || |||||||| |||||||| | || || | Sbjct 34074 ACATTTCTGAATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCCTCTG 34133 Query 46982 TAATCTGTACCTCTGTACAAAATCGTTCA 47010 || || || ||| | ||| |||||| Sbjct 34134 GTATTTGAACTTCTTGAGCAAAACGTTCA 34162 >seq2136 Length=23250 Score = 122 bits (134), Expect = 1e-22 Identities = 214/311 (69%), Gaps = 3/311 (1%) Strand=Plus/Minus Query 75368 TTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCA 75427 |||| | ||| || ||||||| | | ||||| |||||| | ||| ||||| || Sbjct 13118 TTATTGACCGTAAATTGAATGGCATTGACAGCTGGCCGTGTACGCAAATAATACATTCCC 13059 Query 75428 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGA 75487 ||||| ||||| ||| | |||||||||| || | ||| | ||| | ||| Sbjct 13058 GTTTTCAGACCATTTTCCCAAGCAAAGAAATGCATTGAGGTAATTTTTGCATATGTTGGA 12999 Query 75488 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 75547 || || ||||| | ||| | || |||||||| ||||| |||| ||| |||| | ||| Sbjct 12998 TCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATAAAAGGAGCTCGATCAACTGCC 12939 Query 75548 ATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCA 75607 ||||| ||||| ||| ||||||||||||| ||||||| | | ||||||||| Sbjct 12938 ATTTTGATAATTTCACGTTGTGGAATTTCCCAAACAGTTTTGTATAAAGCTTTGATATCT 12879 Query 75608 TCTGGAA---GATTTGTATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATC 75664 ||||| | | ||||||| | || || ||||||||||| | |||||| || Sbjct 12878 TCTGGCAATCCAACAATATTTTGGACAGAACCTCCATCAGATATTAAACGATTCTTCATT 12819 Query 75665 TCATCATTCCA 75675 | |||| ||| Sbjct 12818 TGGTCATCCCA 12808 Score = 111 bits (122), Expect = 2e-19 Identities = 199/288 (69%), Gaps = 2/288 (1%) Strand=Plus/Minus Query 76748 TTATTACCTCCCTGATCTATATATC-TGGCAGTGTTATTATAAACTCTCAACATTGGAAT 76806 ||||| ||||||||||| ||||| | || || | |||| ||||| |||||| ||||| Sbjct 8678 TTATTTCCTCCCTGATCAATATAGCGTGCCACCGA-ATTAAAAACTTGCAACATCGGAAT 8620 Query 76807 AATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACT 76866 ||| || || || | |||||||||||||| || || || | |||||||| | Sbjct 8619 AATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATG 8560 Query 76867 AATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTC 76926 ||| || || || |||||||| ||| ||| || || |||||| || || | ||| || Sbjct 8559 AATGGAAAGTCCAATTCCTCCAGCCGATTTTGAAATATAAGCACAACGATTAATTGTTTC 8500 Query 76927 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATG 76986 | | || || || || ||| | | ||| ||| | |||||| ||| | ||| | Sbjct 8499 AAAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGG 8440 Query 76987 ATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCA 77034 | | || || || || || || || ||||| || ||||| ||||| Sbjct 8439 ACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 8392 Score = 84.2 bits (92), Expect = 3e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 77087 TGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTT 77146 || ||||| ||||| |||||||||||||||||||| || | || || || ||| Sbjct 7986 TGTATTCCAACAGCAACACGCATCAACATATGCTGTGGCCTCTCAACTACTTTTCCATTG 7927 Query 77147 ATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTC 77205 ||| ||| | ||| ||| ||| | |||||||| |||||||| | || || ||| || Sbjct 7926 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGGAAA-TC 7868 Query 77206 TCTTTCGTAAATAATAACCGAATTTAGTTT 77235 | || |||||||| || ||||| ||||| Sbjct 7867 ACGATCATAAATAATTACTGAATTGAGTTT 7838 >seq2388 Length=20594 Score = 120 bits (132), Expect = 4e-22 Identities = 201/288 (70%), Gaps = 2/288 (1%) Strand=Plus/Plus Query 76748 TTATTACCTCCCTGATCTATATATC-TGGCAGTGTTATTATAAACTCTCAACATTGGAAT 76806 ||||| ||||||||||| ||||| | || || | |||| ||||| |||||||||||| Sbjct 12439 TTATTTCCTCCCTGATCAATATAGCGTGCCACAG-AATTAAAAACTTGCAACATTGGAAT 12497 Query 76807 AATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACT 76866 ||| || || || | |||||||||||||| || || || | |||||||| | Sbjct 12498 AATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATG 12557 Query 76867 AATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTC 76926 ||| || || || |||||||| ||| ||| ||||| |||||| || || | ||| || Sbjct 12558 AATGGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTTTC 12617 Query 76927 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATG 76986 | | || || || || ||| | | ||| ||| | |||||| ||| | ||| | Sbjct 12618 AAAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGG 12677 Query 76987 ATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCA 77034 | | || || || || || || || ||||| || ||||| ||||| Sbjct 12678 ACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 12725 Score = 104 bits (114), Expect = 3e-17 Identities = 192/281 (68%), Gaps = 3/281 (1%) Strand=Plus/Plus Query 75398 GCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 75457 ||||| |||||| | ||| ||||| || || || ||||| ||| | ||||| Sbjct 7886 GCTGGCCGTGTACGCAAATAATACATTCCTGTCTTGAGACCATTTTCCCAAGCAAAGAAA 7945 Query 75458 TGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTT 75517 ||||| || | ||| | ||| | ||||| || ||||| | ||| | || |||||| Sbjct 7946 TGCATTGAGGTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTT 8005 Query 75518 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 75577 || ||||| |||| ||| |||| | |||||||| || || || ||||||||| Sbjct 8006 TGGTCGATAAAAGGAGCTCGATCAACTGCCATTTTAATGATTTCACGCTGTGGAATTTCC 8065 Query 75578 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA---GATTTGTATTTTGAATGGAT 75634 |||| ||||||| | | ||||||||| ||||| | | ||||||| | || Sbjct 8066 CAAACAGTTTTGTATAAAGCTTTGATATCTTCTGGCAATCCAACAATATTTTGGACAGAA 8125 Query 75635 CCGCCATCAGATATAATTGTATTCTTGATCTCATCATTCCA 75675 || ||||||||||| | |||||| || | |||| ||| Sbjct 8126 CCTCCATCAGATATTAAACGATTCTTCATTTGGTCATCCCA 8166 Score = 84.2 bits (92), Expect = 3e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 77087 TGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTT 77146 || ||||| ||||| |||||||||||||||||||| || | || || || ||| Sbjct 13128 TGTATTCCAACAGCAACACGCATCAACATATGCTGTGGCCTCTCAACTACTTTTCCATTG 13187 Query 77147 ATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTC 77205 ||| ||| | ||| ||| ||| | |||||||| |||||||| | || || ||| || Sbjct 13188 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGGAAA-TC 13246 Query 77206 TCTTTCGTAAATAATAACCGAATTTAGTTT 77235 | || |||||||| || ||||| ||||| Sbjct 13247 ACGATCATAAATAATTACTGAATTGAGTTT 13276 >seq8961 Length=3088 Score = 116 bits (128), Expect = 5e-21 Identities = 200/288 (69%), Gaps = 2/288 (1%) Strand=Plus/Plus Query 76748 TTATTACCTCCCTGATCTATATATC-TGGCAGTGTTATTATAAACTCTCAACATTGGAAT 76806 ||||| ||||||||||| ||||| | || || | |||| ||||| |||||| ||||| Sbjct 2103 TTATTTCCTCCCTGATCAATATAGCGTGCCACCG-AATTAAAAACTTGCAACATCGGAAT 2161 Query 76807 AATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACT 76866 ||| || || || | |||||||||||||| || || || | |||||||| | Sbjct 2162 AATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATG 2221 Query 76867 AATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTC 76926 |||||| || || |||||||| ||| ||| || || |||||| || || | ||| || Sbjct 2222 AATAGAAAGTCCAATTCCTCCAGCCGATTTTGAAATATAAGCACAACGATTAATTGTTTC 2281 Query 76927 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATG 76986 | | || || || || ||| | | ||| ||| | |||||| ||| | ||| | Sbjct 2282 AAAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGG 2341 Query 76987 ATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCA 77034 | | || || || || || || || ||||| || ||||| ||||| Sbjct 2342 ACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 2389 Score = 84.2 bits (92), Expect = 3e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 77087 TGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTT 77146 || ||||| ||||| |||||||||||||||||||| || | || || || ||| Sbjct 2799 TGTATTCCAACAGCAACACGCATCAACATATGCTGTGGCCTCTCAACTACTTTTCCATTG 2858 Query 77147 ATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTC 77205 ||| ||| | ||| ||| ||| | |||||||| |||||||| | || || ||| || Sbjct 2859 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGGAAA-TC 2917 Query 77206 TCTTTCGTAAATAATAACCGAATTTAGTTT 77235 | || |||||||| || ||||| ||||| Sbjct 2918 ACGATCATAAATAATTACTGAATTGAGTTT 2947 >seq499 Length=68593 Score = 109 bits (120), Expect = 8e-19 Identities = 193/281 (69%), Gaps = 3/281 (1%) Strand=Plus/Plus Query 75398 GCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 75457 ||||| |||||| | ||| ||||| || ||||| | ||| ||| | ||||| Sbjct 9388 GCTGGCCGTGTACGCAAATAATACATTCCTGTTTTCAAACCATTTTCCCAAGCAAAGAAA 9447 Query 75458 TGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTT 75517 ||||| || | ||| | ||| | ||||| || ||||| | ||| | || |||||| Sbjct 9448 TGCATTGAGGTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTT 9507 Query 75518 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 75577 || ||||| |||| ||| |||| | |||||||| || || ||| ||||||||| Sbjct 9508 TGGTCGATAAAAGGAGCTCGATCAACTGCCATTTTAATGATTTCACGTTGTGGAATTTCC 9567 Query 75578 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA---GATTTGTATTTTGAATGGAT 75634 |||| ||||||| | | ||||||||| ||||| | | ||||||| | || Sbjct 9568 CAAACAGTTTTGTATAAAGCTTTGATATCTTCTGGCAATCCAACAATATTTTGGACAGAA 9627 Query 75635 CCGCCATCAGATATAATTGTATTCTTGATCTCATCATTCCA 75675 || ||||||||||| | |||||| || | |||| ||| Sbjct 9628 CCTCCATCAGATATTAAACGATTCTTCATTTGGTCATCCCA 9668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712826648877120