Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1136 96.9 8e-15 seq1361 93.3 1e-13 seq5909 91.5 3e-13 seq696 87.8 4e-12 seq32 87.8 4e-12 >seq1136 Length=40351 Score = 96.9 bits (106), Expect = 8e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 151982 CTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCT 152041 |||||| || | || || |||||||| |||||||||||| || ||| | || | | | Sbjct 26745 CTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCGATGGT 26804 Query 152042 GTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTG 152101 || ||| ||| ||||||||||| || ||||| || || |||||||| ||||||| ||| Sbjct 26805 ATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTTACGAAGATCTG 26864 Query 152102 CATTTT 152107 ||| || Sbjct 26865 CATATT 26870 >seq1361 Length=35035 Score = 93.3 bits (102), Expect = 1e-13 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 151982 CTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCT 152041 |||||| || | | || |||||||| |||||||||||| || ||| | || | | | Sbjct 30293 CTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCGATGGT 30352 Query 152042 GTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTG 152101 || ||| ||| ||||||||||| || ||||| || || |||||||| ||||||| ||| Sbjct 30353 ATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAGATCTG 30412 Query 152102 CATTTT 152107 ||| || Sbjct 30413 CATATT 30418 >seq5909 Length=5756 Score = 91.5 bits (100), Expect = 3e-13 Identities = 97/127 (76%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 151982 CTGCTGGTCCGCCGAGATTCCTTCCTTTTC-TTGAATTTTTTGTTTGACAGTCTCTACGC 152040 |||||| || | || || |||||||| || |||||||||| || ||| | || | | Sbjct 4595 CTGCTGATCAGGCGGAATGCCTTCCTTGTCCTTGAATTTTTGCCTTCACATTTTCGATGG 4654 Query 152041 TGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCT 152100 | || ||| ||| ||||||||||| || ||||| || || |||||||| ||||||| || Sbjct 4655 TATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTTACGAAGATCT 4714 Query 152101 GCATTTT 152107 |||| || Sbjct 4715 GCATATT 4721 >seq696 Length=56493 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 151982 CTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCT 152041 ||| || || | || ||| || || || |||||||||||| || ||| |||| | | | Sbjct 4011 CTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGT 3952 Query 152042 GTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTG 152101 || ||| ||| || || |||||||||||||| || ||||||||||| || || | ||| Sbjct 3951 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 3892 Query 152102 CATTTT 152107 ||| || Sbjct 3891 CATATT 3886 >seq32 Length=201840 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 151982 CTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCT 152041 ||| || || | || ||| || || || |||||||||||| || ||| |||| | | | Sbjct 46653 CTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGT 46712 Query 152042 GTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTG 152101 || ||| ||| || || |||||||||||||| || ||||||||||| || || | ||| Sbjct 46713 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 46772 Query 152102 CATTTT 152107 ||| || Sbjct 46773 CATATT 46778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153642054769061