Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq8769 304 1e-77 seq3973 188 7e-43 seq668 168 7e-37 seq47 150 2e-31 seq323 82.4 8e-11 >seq8769 Length=3178 Score = 304 bits (336), Expect = 1e-77 Identities = 228/265 (86%), Gaps = 7/265 (3%) Strand=Plus/Minus Query 8349 CTCTGTTGCCCAGGCTGGA----GTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGC 8404 |||| | ||||||||||| |||||||||| |||| ||||||||||| ||| || Sbjct 263 CTCTCTCACCCAGGCTGGATGGAGTGCAGTGGCGCAATCTTGGCTCACTGCAAGCTCTGC 204 Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAA 8464 |||||||||||| | |||||||||||||||||||| |||||||||||| |||||| Sbjct 203 CTCCCGGGTTCACACCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCC 144 Query 8465 AGCCACCACGCCAAGCTAAT-TTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGG 8523 ||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 143 CGCCACCACGCCCAGCTAATTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGA 84 Query 8524 CCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGC 8583 ||||| |||||||||||||||||||| |||||||| ||||||| |||||||||||||| Sbjct 83 CCAGGATGGTCTCGAACTCCTGACCT--TGTGATCCGTCTGCCTCAGCCTCCCAAAGTGC 26 Query 8584 TGGGATTACAGGCATGAGCCACCGC 8608 |||||||||||| |||||||| || Sbjct 25 TGGGATTACAGGTGTGAGCCACTGC 1 >seq3973 Length=10312 Score = 188 bits (208), Expect = 7e-43 Identities = 155/185 (84%), Gaps = 3/185 (2%) Strand=Plus/Plus Query 8346 TCACTCT-GTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGC 8404 ||||||| || ||| ||||||||||||| |||| || || |||||||||||||| || Sbjct 10129 TCACTCTTGTCGCCAAGGCTGGAGTGCAATGGCGCGACCTTGACTCACTGCAACCTCTGC 10188 Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAA 8464 |||| |||||||||| |||||||||||||||| ||| ||||||||| | |||||| Sbjct 10189 CTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCTTCCTGAGTAGCTGCAAGTACAGGTGCT 10248 Query 8465 AGCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAG-AGAGAGGGTTTCACCATGTTGG 8523 ||||||||||| |||||||||||||||||||||||| || || ||||| |||| |||| Sbjct 10249 CGCCACCACGCCTAGCTAATTTTTGTATTTTTAGTAGAAGCGA-GGTTTTACCACATTGG 10307 Query 8524 CCAGG 8528 ||||| Sbjct 10308 CCAGG 10312 >seq668 Length=57742 Score = 168 bits (186), Expect = 7e-37 Identities = 327/487 (67%), Gaps = 38/487 (8%) Strand=Plus/Minus Query 23428 TTTTCAATGGAAACAGCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATAT 23487 |||||||| |||||| ||| |||||||| ||||| ||| | | | ||| || Sbjct 38789 TTTTCAATATCAACAGCCTCTCGAATTATTTCCTCAATACGTTCATTATTTGGTTTATTA 38730 Query 23488 TTTAAATACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATC 23547 || |||| | || | |||||| |||||||| | ||| || |||||||| | | ||| Sbjct 38729 TTCAAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATT 38670 Query 23548 AATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCA 23607 ||||||||| ||| | ||| ||||| || || ||||| || | |||||| |||||| Sbjct 38669 AATTCATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCA 38610 Query 23608 GCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCA 23667 ||||| ||| || ||||| ||||||||||| || ||||| || | ||||||| |||| Sbjct 38609 GCAAAACTTCCAGAGAAGAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCA 38550 Query 23668 AATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTA----- 23722 |||| || | | | || | |||| | ||||| ||| || || | Sbjct 38549 AATGAAGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAA 38490 Query 23723 -CACACTCAATTGT----TTCAATTGCTTT----TAAGAGAAAAGTTTTTT--------- 23764 || |||| | | | || || |||| || | |||| |||||| Sbjct 38489 TCAAACTCGAATATAGCATTAAACAACTTTGAACTATTAAAAAAATTTTTTTAATCTAAA 38430 Query 23765 ------------CTTCATT---ATCTGTTATATATGTATCAATTAGTAAACTATACATTT 23809 |||| | |||| | ||||| |||||||||| | |||||||| Sbjct 38429 GAAGGAAATACCGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAATACATTT 38370 Query 23810 CAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATT 23869 | ||||||||||||||||||||||| ||||| ||||||||||| | |||||| | | || Sbjct 38369 CTGAATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCTTCTGGTATTT 38310 Query 23870 GAACATC 23876 |||| || Sbjct 38309 GAACTTC 38303 >seq47 Length=171977 Score = 150 bits (166), Expect = 2e-31 Identities = 324/492 (66%), Gaps = 43/492 (9%) Strand=Plus/Plus Query 23428 TTTTCAATGGAAACAGCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATAT 23487 |||||||| |||||| ||| |||||||| ||||| ||| | | | ||| || Sbjct 33655 TTTTCAATATCAACAGCCTCTCGAATTATTTCCTCAATACGTTCATTATTTGGTTTATTA 33714 Query 23488 TTTAAATACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATC 23547 || |||| || || | || ||| |||||||| | ||| || |||||||| | | ||| Sbjct 33715 TTCAAATGCTGGAAAAGTAGACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATT 33774 Query 23548 AATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCA 23607 ||||||||| ||| | ||| ||||| | || ||||| || | |||||| |||||| Sbjct 33775 AATTCATTACTTTGTGTCAGTCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCA 33834 Query 23608 GCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCA 23667 ||||| ||| || ||||| ||||||||||| || ||||| || | |||||| |||| Sbjct 33835 GCAAAACTTCCAGAGAAGAATATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCA 33894 Query 23668 AATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACAC 23727 |||| || | | | || | |||| | ||||| ||| || || | | | Sbjct 33895 AATGAAGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAA 33954 Query 23728 TCA---------ATTGTTTCAA------TTG--CTTTTAAGAGAAAAGTTTTTTCTTCAT 23770 ||| || | | || ||| || |||| | |||| ||||| || || Sbjct 33955 TCAAATTCGAATATAGCATTAAATAACTTTGAACTATTAAAAAAAAATATTTTTTTTAAT 34014 Query 23771 T--------------------------ATCTGTTATATATGTATCAATTAGTAAACTATA 23804 | |||| | ||||| |||||||||| | ||| Sbjct 34015 TTAAAGAAGGAAATACCGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAATA 34074 Query 23805 CATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGA 23864 |||||| ||||||||||||||||||||||| ||||| ||||||||||| | ||| || | Sbjct 34075 CATTTCTGAATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCCTCTGG 34134 Query 23865 CAATTGAACATC 23876 | |||||| || Sbjct 34135 TATTTGAACTTC 34146 >seq323 Length=85190 Score = 82.4 bits (90), Expect = 8e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 139438 CATACAAAATTTTGGATTGTTGATAATAAACATATATATATTGGAAGTGCTAACATGGAC 139497 |||| ||| ||||||||||||| ||| ||||| | ||| | || |||||| ||||| Sbjct 15387 CATAGCAAACTTTGGATTGTTGACAATCAACATTTTTATTTAGGTTCTGCTAATATGGAT 15446 Query 139498 TGGCGATCACTAACTCAAGTAAAAGAATTAGGTAT 139532 |||| |||| ||||| |||| |||||||| || || Sbjct 15447 TGGCAATCATTAACTGAAGTTAAAGAATTGGGAAT 15481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521409183607400