Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29]
31,341 sequences; 235,798,407 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq20751 89.7 1e-12
seq6556 89.7 1e-12
seq1266 89.7 1e-12
>seq20751
Length=3780
Score = 89.7 bits (98), Expect = 1e-12
Identities = 58/64 (91%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
|||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||
Sbjct 1246 TGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAG 1187
Query 165769 CCCC 165772
||||
Sbjct 1186 CCCC 1183
>seq6556
Length=10579
Score = 89.7 bits (98), Expect = 1e-12
Identities = 58/64 (91%), Gaps = 0/64 (0%)
Strand=Plus/Plus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
|||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||
Sbjct 5986 TGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAG 6045
Query 165769 CCCC 165772
||||
Sbjct 6046 CCCC 6049
Score = 87.8 bits (96), Expect = 4e-12
Identities = 57/63 (90%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| |||||||||||||||||| ||||||| |||||||||| |||| ||||||||||
Sbjct 8103 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 8044
Query 165770 CCC 165772
|||
Sbjct 8043 CCC 8041
>seq1266
Length=22135
Score = 89.7 bits (98), Expect = 1e-12
Identities = 58/64 (91%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
|||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||
Sbjct 20439 TGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAG 20380
Query 165769 CCCC 165772
||||
Sbjct 20379 CCCC 20376
Score = 87.8 bits (96), Expect = 4e-12
Identities = 57/63 (90%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| |||||||||||||||||| ||||||| |||||||||| |||| ||||||||||
Sbjct 17855 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 17914
Query 165770 CCC 165772
|||
Sbjct 17915 CCC 17917
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057399223830830
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |