Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq2786 89.7 5e-13 seq13787 86.0 6e-12 seq3049 84.2 2e-11 seq27688 82.4 8e-11 >seq2786 Length=16508 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 16274 CCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACA 16333 || |||||||||| ||| || || |||||||| || |||||||||||||||||||| Sbjct 4247 CCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAAAAGAATATACCCTCAACT 4306 Query 16334 GATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGT 16393 | ||||||||| || | ||||| | | | ||| |||||| || | |||| | Sbjct 4307 GCTGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCTTTACTAGCAGTCCAACGAAGA 4366 Query 16394 ACCCATTCGGCTTTTTGTTTTATACAATC 16422 |||| || ||||||| || ||| |||| Sbjct 4367 GCCCAATCAGCTTTTTTCTTGATAAAATC 4395 >seq13787 Length=5932 Score = 86.0 bits (94), Expect = 6e-12 Identities = 154/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 16198 TAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGT 16257 |||||| || || || | ||| |||||||| |||| || | ||| || || Sbjct 754 TAGACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGTGT 813 Query 16258 TAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAA 16317 | || ||||| | || |||||||||| ||| || || |||||||| || || || Sbjct 814 CAGTCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAA 873 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATT 16377 ||||||||||||||| | |||||||| || | ||||| | | | ||| |||||| | Sbjct 874 GAATATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCTTTACT 933 Query 16378 ACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATC 16422 | | |||| | |||| || ||||||| || ||| |||| Sbjct 934 AGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATC 978 >seq3049 Length=15854 Score = 84.2 bits (92), Expect = 2e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 16274 CCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACA 16333 || |||||||||| ||| || || |||||||| || || ||||||||||||||||| Sbjct 13853 CCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAAGAATATACCCTCAACT 13912 Query 16334 GATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGT 16393 | |||||||| || | ||||| | | | ||| |||||| || | |||| | Sbjct 13913 GCGGCAAAAGCAATAAGACGTTCACCAAATGAAGCTTCTTTACTAGCAGTCCAACGAAGA 13972 Query 16394 ACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTT 16449 |||| || ||||||| || ||| |||| | | ||| || |||||||| || Sbjct 13973 GCCCAATCAGCTTTTTTCTTGATAAAATCAAACTCGAATATAGCATTAAACAACTT 14028 >seq27688 Length=2484 Score = 82.4 bits (90), Expect = 8e-11 Identities = 125/177 (71%), Gaps = 1/177 (1%) Strand=Plus/Minus Query 16274 CCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACA 16333 || |||||||||| ||| || || |||||||| || || ||||||||||||||||| Sbjct 301 CCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAAGAATATACCCTCAACT 242 Query 16334 GATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGT 16393 | |||||||| || | ||||| | | | ||| |||||| || | |||| | Sbjct 241 GCGGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCTTTACTAGCAGTCCAACGAAGA 182 Query 16394 ACCCATTCGGC-TTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTT 16449 |||| || || ||||| ||| ||| |||| | | ||| || |||||||| || Sbjct 181 GCCCAATCAGCTTTTTTCTTTGATAAAATCAAACTCGAATATAGCATTAAACAACTT 125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511214047016120