Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29]
31,341 sequences; 235,798,407 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq2786 89.7 5e-13
seq13787 86.0 6e-12
seq3049 84.2 2e-11
seq27688 82.4 8e-11
>seq2786
Length=16508
Score = 89.7 bits (98), Expect = 5e-13
Identities = 109/149 (73%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 16274 CCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACA 16333
|| |||||||||| ||| || || |||||||| || ||||||||||||||||||||
Sbjct 4247 CCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAAAAGAATATACCCTCAACT 4306
Query 16334 GATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGT 16393
| ||||||||| || | ||||| | | | ||| |||||| || | |||| |
Sbjct 4307 GCTGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCTTTACTAGCAGTCCAACGAAGA 4366
Query 16394 ACCCATTCGGCTTTTTGTTTTATACAATC 16422
|||| || ||||||| || ||| ||||
Sbjct 4367 GCCCAATCAGCTTTTTTCTTGATAAAATC 4395
>seq13787
Length=5932
Score = 86.0 bits (94), Expect = 6e-12
Identities = 154/225 (68%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 16198 TAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGT 16257
|||||| || || || | ||| |||||||| |||| || | ||| || ||
Sbjct 754 TAGACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGTGT 813
Query 16258 TAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAA 16317
| || ||||| | || |||||||||| ||| || || |||||||| || || ||
Sbjct 814 CAGTCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAA 873
Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATT 16377
||||||||||||||| | |||||||| || | ||||| | | | ||| |||||| |
Sbjct 874 GAATATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCTTTACT 933
Query 16378 ACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATC 16422
| | |||| | |||| || ||||||| || ||| ||||
Sbjct 934 AGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATC 978
>seq3049
Length=15854
Score = 84.2 bits (92), Expect = 2e-11
Identities = 124/176 (70%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 16274 CCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACA 16333
|| |||||||||| ||| || || |||||||| || || |||||||||||||||||
Sbjct 13853 CCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAAGAATATACCCTCAACT 13912
Query 16334 GATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGT 16393
| |||||||| || | ||||| | | | ||| |||||| || | |||| |
Sbjct 13913 GCGGCAAAAGCAATAAGACGTTCACCAAATGAAGCTTCTTTACTAGCAGTCCAACGAAGA 13972
Query 16394 ACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTT 16449
|||| || ||||||| || ||| |||| | | ||| || |||||||| ||
Sbjct 13973 GCCCAATCAGCTTTTTTCTTGATAAAATCAAACTCGAATATAGCATTAAACAACTT 14028
>seq27688
Length=2484
Score = 82.4 bits (90), Expect = 8e-11
Identities = 125/177 (71%), Gaps = 1/177 (1%)
Strand=Plus/Minus
Query 16274 CCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACA 16333
|| |||||||||| ||| || || |||||||| || || |||||||||||||||||
Sbjct 301 CCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAAGAATATACCCTCAACT 242
Query 16334 GATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGT 16393
| |||||||| || | ||||| | | | ||| |||||| || | |||| |
Sbjct 241 GCGGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCTTTACTAGCAGTCCAACGAAGA 182
Query 16394 ACCCATTCGGC-TTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTT 16449
|||| || || ||||| ||| ||| |||| | | ||| || |||||||| ||
Sbjct 181 GCCCAATCAGCTTTTTTCTTTGATAAAATCAAACTCGAATATAGCATTAAACAACTT 125
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511214047016120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |