Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29]
31,341 sequences; 235,798,407 total letters
Query= NC_001348.1
Length=124884
Score E
Sequences producing significant alignments: (Bits) Value
seq5035 91.5 1e-13
seq31166 86.0 5e-12
seq60 86.0 5e-12
>seq5035
Length=12327
Score = 91.5 bits (100), Expect = 1e-13
Identities = 101/135 (75%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 19068 GGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACA 19127
|| || || ||||| || || | ||| || | ||||| | || | || ||||| |||
Sbjct 8459 GGCGTTCCTTTCAATATAGCCAGTTATTCATTACTTACTCATATGATCGCTCATGTAACA 8400
Query 19128 GGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCAT 19187
||||||||| | || || || ||||||||| | || |||||||||||||| | | |||
Sbjct 8399 GGACTTAAAGCGGGTGAATTTATTCATACACTTGGTGATGCACATATTTATTCTACACAT 8340
Query 19188 ATAGATGCTTTAAAA 19202
|||| |||||||||
Sbjct 8339 TTAGAAGCTTTAAAA 8325
>seq31166
Length=2021
Score = 86.0 bits (94), Expect = 5e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 19068 GGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACA 19127
|| || || ||||| || || | ||| || | ||||| | || | || ||||| |||
Sbjct 865 GGCGTTCCTTTCAATATAGCCAGTTATTCATTACTTACTCATATGATCGCTCATGTAACA 924
Query 19128 GGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCAT 19187
||||||||| | || || || ||||||||| | || ||||| |||||||| | | |||
Sbjct 925 GGACTTAAAGCGGGTGAATTTATTCATACACTTGGTGATGCTCATATTTATTCTACACAT 984
Query 19188 ATAGATGCTTTAAAA 19202
|||| |||||||||
Sbjct 985 TTAGAAGCTTTAAAA 999
>seq60
Length=47019
Score = 86.0 bits (94), Expect = 5e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 19068 GGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACA 19127
|| || || ||||| || || | ||| || | ||||| | || | || ||||| |||
Sbjct 12318 GGCGTTCCTTTCAATATAGCCAGTTATTCATTACTTACTCATATGATCGCTCATGTAACA 12259
Query 19128 GGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCAT 19187
||||||||| | || || || ||||||||| | || ||||| |||||||| | | |||
Sbjct 12258 GGACTTAAAGCGGGTGAATTTATTCATACACTTGGTGATGCTCATATTTATTCTACACAT 12199
Query 19188 ATAGATGCTTTAAAA 19202
|||| |||||||||
Sbjct 12198 TTAGAGGCTTTAAAA 12184
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 399351402081345
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |