Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq5035 91.5 1e-13 seq31166 86.0 5e-12 seq60 86.0 5e-12 >seq5035 Length=12327 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 19068 GGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACA 19127 || || || ||||| || || | ||| || | ||||| | || | || ||||| ||| Sbjct 8459 GGCGTTCCTTTCAATATAGCCAGTTATTCATTACTTACTCATATGATCGCTCATGTAACA 8400 Query 19128 GGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCAT 19187 ||||||||| | || || || ||||||||| | || |||||||||||||| | | ||| Sbjct 8399 GGACTTAAAGCGGGTGAATTTATTCATACACTTGGTGATGCACATATTTATTCTACACAT 8340 Query 19188 ATAGATGCTTTAAAA 19202 |||| ||||||||| Sbjct 8339 TTAGAAGCTTTAAAA 8325 >seq31166 Length=2021 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 19068 GGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACA 19127 || || || ||||| || || | ||| || | ||||| | || | || ||||| ||| Sbjct 865 GGCGTTCCTTTCAATATAGCCAGTTATTCATTACTTACTCATATGATCGCTCATGTAACA 924 Query 19128 GGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCAT 19187 ||||||||| | || || || ||||||||| | || ||||| |||||||| | | ||| Sbjct 925 GGACTTAAAGCGGGTGAATTTATTCATACACTTGGTGATGCTCATATTTATTCTACACAT 984 Query 19188 ATAGATGCTTTAAAA 19202 |||| ||||||||| Sbjct 985 TTAGAAGCTTTAAAA 999 >seq60 Length=47019 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 19068 GGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACA 19127 || || || ||||| || || | ||| || | ||||| | || | || ||||| ||| Sbjct 12318 GGCGTTCCTTTCAATATAGCCAGTTATTCATTACTTACTCATATGATCGCTCATGTAACA 12259 Query 19128 GGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCAT 19187 ||||||||| | || || || ||||||||| | || ||||| |||||||| | | ||| Sbjct 12258 GGACTTAAAGCGGGTGAATTTATTCATACACTTGGTGATGCTCATATTTATTCTACACAT 12199 Query 19188 ATAGATGCTTTAAAA 19202 |||| ||||||||| Sbjct 12198 TTAGAGGCTTTAAAA 12184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399351402081345