Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29]
31,341 sequences; 235,798,407 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq490 107 2e-18
seq16867 98.7 1e-15
seq1624 98.7 1e-15
seq30683 95.1 1e-14
seq13787 95.1 1e-14
seq2786 95.1 1e-14
seq3049 91.5 2e-13
seq20812 89.7 6e-13
seq9293 86.0 7e-12
>seq490
Length=29575
Score = 107 bits (118), Expect = 2e-18
Identities = 196/287 (68%), Gaps = 0/287 (0%)
Strand=Plus/Plus
Query 54179 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 54238
|| |||||||||||||| || || | || |||| ||||| |||||||||||||
Sbjct 6648 TTATTTCCTCCCTGATCAATATAGCGTGCCACAGAATTAAAAACTTGCAACATTGGAATA 6707
Query 54239 ATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA 54298
|| ||||| || ||||| || || ||||| | || |||||||| | |
Sbjct 6708 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGA 6767
Query 54299 ATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 54358
||||| || || || || || ||| ||| ||||| | || || || |||| || |||
Sbjct 6768 ATTGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTTTCA 6827
Query 54359 TAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 54418
| || || || || ||| | | ||| ||| | |||||| ||| | ||| ||
Sbjct 6828 AAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 6887
Query 54419 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 54465
|| | || ||||| || ||||| || ||||| ||||| ||||||||
Sbjct 6888 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 6934
Score = 104 bits (114), Expect = 3e-17
Identities = 116/154 (75%), Gaps = 1/154 (1%)
Strand=Plus/Plus
Query 54771 TAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGG 54830
|||| | ||||| ||||||||||| |||||||| || || ||||| || || || | |
Sbjct 7966 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 8025
Query 54831 CATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATT 54890
||||||| || || ||||||| | || |||| ||| || | || | | |||||||
Sbjct 8026 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCTACTTCAGCCGCCAAATTATCCAATT 8085
Query 54891 CTACCGTTGTTACTCCATTATATATTCCT-TGGA 54923
| || |||||||||||| |||| || ||| ||||
Sbjct 8086 CAACAGTTGTTACTCCAGTATAAATGCCTCTGGA 8119
Score = 98.7 bits (108), Expect = 1e-15
Identities = 149/209 (71%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 52838 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTT 52897
||||| | ||| ||||| ||||| || ||||| ||| | | ||||||||
Sbjct 355 GTACGCAAATAATACATCCCCGTCTTCAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 414
Query 52898 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 52957
|| | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| |||||
Sbjct 415 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 474
Query 52958 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 53017
|| | | | ||| | |||||||| ||||| ||||||||||||||||| ||||
Sbjct 475 AAAGGAGCTCGATCTACTGCCATTTTGATGATTTCACGTTGTGGAATTTCCCAAACAGTT 534
Query 53018 T--TATAAA-CTCGCTTAATATCTTCTGG 53043
| |||||| || || |||||||||||
Sbjct 535 TTGTATAAAGCT---TTGATATCTTCTGG 560
>seq16867
Length=4829
Score = 98.7 bits (108), Expect = 1e-15
Identities = 115/154 (75%), Gaps = 1/154 (1%)
Strand=Plus/Plus
Query 54771 TAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGG 54830
|||| | ||||| ||||||||||| |||||||| || || ||||| || || || | |
Sbjct 1898 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 1957
Query 54831 CATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATT 54890
||||||| || || ||||||| | || || | ||| || | || | | |||||||
Sbjct 1958 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCCACTTCAGCCGCCAAATTATCCAATT 2017
Query 54891 CTACCGTTGTTACTCCATTATATATTCCT-TGGA 54923
| || |||||||||||| |||| || ||| ||||
Sbjct 2018 CAACAGTTGTTACTCCAGTATAAATGCCTCTGGA 2051
Score = 95.1 bits (104), Expect = 1e-14
Identities = 193/287 (67%), Gaps = 0/287 (0%)
Strand=Plus/Plus
Query 54179 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 54238
|| |||||||||||||| || || | || |||| ||||| |||||||||||||
Sbjct 278 TTATTTCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATTGGAATA 337
Query 54239 ATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA 54298
|| ||||| || ||||| || || ||||| | || |||||||| | |
Sbjct 338 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGA 397
Query 54299 ATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 54358
|| || || || || || || ||| ||| || || | || || || || | || |||
Sbjct 398 ATGGAAAGTCCAATTCCTCCAGCCGATTTTGAAATATAAGCACAACGATTAATTGTTTCA 457
Query 54359 TAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 54418
| || || || || ||| | | ||| ||| | |||||| ||| | ||| ||
Sbjct 458 AAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 517
Query 54419 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 54465
|| | || ||||| || ||||| || ||||| ||||| ||||||||
Sbjct 518 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 564
>seq1624
Length=20192
Score = 98.7 bits (108), Expect = 1e-15
Identities = 149/209 (71%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 52838 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTT 52897
||||| | ||| |||||||||||||| ||||| ||| | | ||||||||
Sbjct 11634 GTACGCAAATAATACATTCCCGTTTTCAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 11693
Query 52898 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 52957
|| | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| |||||
Sbjct 11694 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 11753
Query 52958 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 53017
|| | | | || | |||||||| || || ||||||||||||||||| ||||
Sbjct 11754 AAAGGAGCTCGATCAACTGCCATTTTGATAATTTCACGTTGTGGAATTTCCCAAACAGTT 11813
Query 53018 T--TATAAA-CTCGCTTAATATCTTCTGG 53043
| |||||| || || |||||||||||
Sbjct 11814 TTGTATAAAGCT---TTGATATCTTCTGG 11839
Score = 98.7 bits (108), Expect = 1e-15
Identities = 194/287 (68%), Gaps = 0/287 (0%)
Strand=Plus/Plus
Query 54179 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 54238
|| |||||||||||||| || || | || |||| ||||| |||||||||||||
Sbjct 16035 TTATTTCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATTGGAATA 16094
Query 54239 ATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA 54298
|| ||||| || ||||| || || ||||| | || |||||||| |
Sbjct 16095 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGG 16154
Query 54299 ATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 54358
|| || || || || || || ||| ||| ||||| | || || || |||| || |||
Sbjct 16155 ATGGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTTTCA 16214
Query 54359 TAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 54418
| || || || || ||| | | ||| ||| | |||||| ||| | ||| ||
Sbjct 16215 AAAATTCCTTCAATTGAATCTCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 16274
Query 54419 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 54465
|| | || ||||| || ||||| || ||||| ||||| ||||||||
Sbjct 16275 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 16321
Score = 98.7 bits (108), Expect = 1e-15
Identities = 115/154 (75%), Gaps = 1/154 (1%)
Strand=Plus/Plus
Query 54771 TAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGG 54830
|||| | ||||| || || ||||| |||||||| || || ||||| || || || | |
Sbjct 17458 TAAAAACCTTTTTCGTCTCCTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 17517
Query 54831 CATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATT 54890
|||||||||| || ||||||| | || |||| ||| || | || | | |||||||
Sbjct 17518 CATAATCCGGGTGAACTGTAGTATTTGAAGCAGCTACTTCAGCCGCCAAATTATCCAATT 17577
Query 54891 CTACCGTTGTTACTCCATTATATATTCCT-TGGA 54923
| || |||||||||||| |||| || ||| ||||
Sbjct 17578 CAACAGTTGTTACTCCAGTATAAATGCCTCTGGA 17611
Score = 93.3 bits (102), Expect = 5e-14
Identities = 112/150 (75%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 54518 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTT 54577
|| ||||| || || |||||||| ||||| ||||| || || ||||| | || ||
Sbjct 16535 TGTATTCCAACAGCAACACGCATCAACATATGCTGTGGCCTCTCAACTACTTTTCCATTG 16594
Query 54578 ATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTC 54636
||| || | ||| ||| ||| | |||||||| |||||||| | || |||||| ||
Sbjct 16595 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGAAAA-TC 16653
Query 54637 TCGTTCGTAAATAATAACTGAGTTGAGTTT 54666
|| || |||||||||||||| ||||||||
Sbjct 16654 ACGATCATAAATAATAACTGAATTGAGTTT 16683
>seq30683
Length=2079
Score = 95.1 bits (104), Expect = 1e-14
Identities = 193/287 (67%), Gaps = 0/287 (0%)
Strand=Plus/Minus
Query 54179 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 54238
|| || ||||||||||| || || | || |||| ||||| |||||||||||||
Sbjct 617 TTATTCCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATTGGAATA 558
Query 54239 ATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA 54298
|| ||||| || ||||| || || ||||| | || |||||||| |
Sbjct 557 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGG 498
Query 54299 ATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 54358
|| || || || || || || ||| ||| ||||| | || || || |||| || |||
Sbjct 497 ATGGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTTTCA 438
Query 54359 TAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 54418
| || || || || ||| | | ||| ||| | |||||| ||| | ||| ||
Sbjct 437 AAAATTCCTTCAATTGAATCTCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 378
Query 54419 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 54465
|| | || ||||| || ||||| || ||||| ||||| ||||||||
Sbjct 377 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 331
>seq13787
Length=5932
Score = 95.1 bits (104), Expect = 1e-14
Identities = 93/120 (78%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454
|||||||| ||| |||||||| || ||||||||| |||||||| |||||||| ||
Sbjct 1065 ATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTTTCAATAGC 1124
Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC 24514
||||||||||| || ||||| | |||||| | || || |||||| | ||| |||||
Sbjct 1125 AATTTGAAATCCATAAAAACAACGAGCCTCTGGTATTTGAACTTCTTGAGCAAAACGTTC 1184
>seq2786
Length=16508
Score = 95.1 bits (104), Expect = 1e-14
Identities = 93/120 (78%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454
|||||||| ||| |||||||| || ||||||||| |||||||| |||||||| ||
Sbjct 4481 ATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTTTCAATAGC 4540
Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC 24514
||||||||||| || ||||| | |||||| | || || |||||| | ||| |||||
Sbjct 4541 AATTTGAAATCCATAAAAACAACGAGCCTCTGGTATTTGAACTTCTTGAGCAAAACGTTC 4600
Score = 89.7 bits (98), Expect = 6e-13
Identities = 126/177 (71%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 24117 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAAT 24176
||||||| || | ||||| || ||||| | || || || || |||| | |||||||
Sbjct 4157 AAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAAT 4216
Query 24177 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 24236
|| || || ||||| ||||| | || || || || |||||||| || | |||
Sbjct 4217 TCATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCA 4276
Query 24237 AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCA 24293
|| |||||||||||| || || || ||||| ||||| ||||| || | ||| |||
Sbjct 4277 AAACTTCCAGAAAAGAATATACCCTCAACTGCTGCAAAAGCAATGAGACGTTCACCA 4333
>seq3049
Length=15854
Score = 91.5 bits (100), Expect = 2e-13
Identities = 92/120 (77%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454
|||||||| ||| |||||||| || ||||||||| |||||||| |||||||| ||
Sbjct 14081 ATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTTTCAATAGC 14140
Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC 24514
||||||||||| || ||||| | ||| || | || || |||||| | ||| |||||
Sbjct 14141 AATTTGAAATCCATAAAAACAACGAGCTTCTGGTATTTGAACTTCTTGAGCAAAACGTTC 14200
Score = 82.4 bits (90), Expect = 9e-11
Identities = 86/113 (76%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 24633 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 24692
|| || || || ||||| || || || | ||||||||||| | | ||| ||||| |||
Sbjct 14402 ACCTCCTCTACAGTCCAGAACGAAGCAACGGCCTTTTTATAAAATTGCCAAATGTCCTGA 14461
Query 24693 TATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGATTGGTTC 24745
|||| || |||||||||||||| | ||||||||||| | || | ||||||
Sbjct 14462 TATTTGATCGGAAAAATAACAAAACGATTTGGATTTTCTCGCAGTAATGGTTC 14514
>seq20812
Length=3765
Score = 89.7 bits (98), Expect = 6e-13
Identities = 147/209 (70%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 52838 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTT 52897
||||| | ||| ||||| || || || ||||| ||| | | ||||||||
Sbjct 789 GTACGCAAATAATACATCCCTGTCTTAAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 848
Query 52898 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 52957
|| | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| |||||
Sbjct 849 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 908
Query 52958 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 53017
|| | | | || | |||||||| ||||| ||||||||||||||||| ||||
Sbjct 909 AAAGGAGCTCGATCAACTGCCATTTTGATGATTTCACGTTGTGGAATTTCCCAAACAGTT 968
Query 53018 T--TATAAA-CTCGCTTAATATCTTCTGG 53043
| |||||| || || |||||||||||
Sbjct 969 TTGTATAAAGCT---TTGATATCTTCTGG 994
>seq9293
Length=8283
Score = 86.0 bits (94), Expect = 7e-12
Identities = 146/209 (70%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 52838 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTT 52897
||||| | ||| ||||| || || || ||||| ||| | | ||||||||
Sbjct 5302 GTACGCAAATAATACATCCCTGTCTTAAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 5361
Query 52898 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 52957
|| | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| |||||
Sbjct 5362 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 5421
Query 52958 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 53017
|| | | | || | |||||||| ||||| ||||||||||||||||| ||||
Sbjct 5422 AAAGGAGCTCGATCAACTGCCATTTTGATGATTTCACGTTGTGGAATTTCCCAAACAGTT 5481
Query 53018 T--TATAAA-CTCGCTTAATATCTTCTGG 53043
| |||||| || || || ||||||||
Sbjct 5482 TTGTATAAAGCT---TTGATGTCTTCTGG 5507
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593489002141680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |