Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2786 100 3e-16 seq27688 98.7 1e-15 seq3049 96.9 4e-15 seq27347 93.3 4e-14 seq13787 91.5 2e-13 seq10902 87.8 2e-12 seq19449 84.2 2e-11 seq8650 84.2 2e-11 seq7966 84.2 2e-11 >seq2786 Length=16508 Score = 100 bits (110), Expect = 3e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 116976 TCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCG 117035 |||| | || || || ||||| || || |||| || | | ||| || | || || | Sbjct 4388 TCAAGAAAAAAGCTGATTGGGCTCTTCGTTGGACTGCTAGTAAAGAAGCTTCATTTGGTG 4329 Query 117036 AGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCA 117095 | || || | || || || || || ||||| | |||||||| || ||||| || || | Sbjct 4328 AACGTCTCATTGCTTTTGCAGCAGTTGAGGGTATATTCTTTTCTGGAAGTTTTGCTGCAA 4269 Query 117096 TATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCT 117155 | |||||||| ||||||||||| | ||||| || ||||| || || || | || | Sbjct 4268 TTTTTTGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAATTT 4209 Query 117156 CCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208 | | || || || || ||| | || ||||| ||||| || ||| | |||||| Sbjct 4208 CTCGAGATGAAGGACTTCATCGAGATTTTGCTTGTTTACTTTTCCAACATTTG 4156 >seq27688 Length=2484 Score = 98.7 bits (108), Expect = 1e-15 Identities = 163/234 (70%), Gaps = 1/234 (0%) Strand=Plus/Plus Query 116976 TCAAAGAGAAG-GCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGC 117034 ||||||| || || || ||||| || || |||| || | | ||| || | || || Sbjct 159 TCAAAGAAAAAAGCTGATTGGGCTCTTCGTTGGACTGCTAGTAAAGAAGCTTCATTTGGT 218 Query 117035 GAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCC 117094 || || || | || || || || || ||||| | ||||| || || ||||| || || Sbjct 219 GAACGTCTCATTGCTTTTGCCGCAGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCA 278 Query 117095 ATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATC 117154 || |||||||| ||||||||||| | ||||| || ||||| || || || | || Sbjct 279 ATTTTTTGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAATT 338 Query 117155 TCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208 || | || || || || ||| | || ||||| ||||| || ||| | |||||| Sbjct 339 TCTCGTGATGAAGGACTTCATCGAGATTTTGCTTGTTTACTTTTCCAACATTTG 392 >seq3049 Length=15854 Score = 96.9 bits (106), Expect = 4e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 116976 TCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCG 117035 |||| | || || || ||||| || || |||| || | | ||| || | || || | Sbjct 13994 TCAAGAAAAAAGCTGATTGGGCTCTTCGTTGGACTGCTAGTAAAGAAGCTTCATTTGGTG 13935 Query 117036 AGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCA 117095 | || || | || || || || || ||||| | ||||| || || ||||| || || | Sbjct 13934 AACGTCTTATTGCTTTTGCCGCAGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCAA 13875 Query 117096 TATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCT 117155 | |||||||| ||||||||||| | ||||| || ||||| || || || | || | Sbjct 13874 TTTTTTGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAATTT 13815 Query 117156 CCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208 | | || || || || ||| | || ||||| ||||| || ||| | |||||| Sbjct 13814 CTCGTGATGAAGGACTTCATCGAGATTTTGCTTGTTTACTTTTCCAACATTTG 13762 >seq27347 Length=2531 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 116993 TGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTC 117052 ||||| || || |||| || | | ||| || | || || || || || | || || Sbjct 2 TGGGCTCTTCGTTGGACTGCTAGTAAAGAAGCTTCATTTGGTGAACGTCTTATTGCTTTT 61 Query 117053 GCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAA 117112 || || || ||||| | ||||| || || ||||| || || || |||||||| |||||| Sbjct 62 GCCGCAGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCAATTTTTTGGCTAAAGAAA 121 Query 117113 CGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTG 117172 ||||| | ||||| || ||||| || || || | || || | || || || || Sbjct 122 CGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAATTTCTCGTGATGAAGGACTT 181 Query 117173 CATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208 ||| | || ||||| ||||| || ||| | |||||| Sbjct 182 CATCGAGATTTTGCTTGTTTACTTTTCCAACATTTG 217 >seq13787 Length=5932 Score = 91.5 bits (100), Expect = 2e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 116976 TCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCG 117035 |||| | || || || ||||| || || |||| || | | ||| || | || || | Sbjct 971 TCAAGAAAAAAGCTGATTGGGCTCTTCGTTGGACTGCTAGTAAAGAAGCTTCATTTGGTG 912 Query 117036 AGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCA 117095 | || || | || || || || || ||||| | ||||| || || ||||| || || | Sbjct 911 AACGTCTCATTGCTTTTGCCGCGGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCAA 852 Query 117096 TATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCT 117155 | |||||||| ||||||||||| ||||| || ||||| || || || | || | Sbjct 851 TTTTTTGGCTAAAGAAACGCGGTTATATGCCTGGACTGACACAAAGTAATGAATTAATTT 792 Query 117156 CCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208 | | || || || || ||| | || ||||| ||| | || ||| |||||||| Sbjct 791 CTCGAGATGAAGGACTTCATCGAGATTTTGCTTGTCTACTTTTCCAGCATTTG 739 >seq10902 Length=7311 Score = 87.8 bits (96), Expect = 2e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||| | || || ||||||||||| || || || |||||| | || || || | Sbjct 5798 ATGCAAGTCTTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCG 5857 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| |||||| || || | || || ||||| |||||| |||| ||| Sbjct 5858 GACACCATCGAAAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAG 5917 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || |||| ||| || ||||| |||| || | || || | ||||||||| Sbjct 5918 CAACGTCTAATCTTCGCAGGGAAACAATTGGAGGATGGTCGTACGTTGGCCGACTACAAT 5977 Query 40870 ATCCAG 40875 || ||| Sbjct 5978 ATTCAG 5983 >seq19449 Length=4096 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||| | || || ||||||||||| || || || |||||| | || || || | Sbjct 841 ATGCAAGTCTTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCG 900 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | || || ||||| |||||| |||| ||| Sbjct 901 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAG 960 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||||| ||| || || ||| |||| || | || || | |||||||| Sbjct 961 CAACGTCTCATCTTCGCAGGGAAGCAGTTGGAGGATGGTCGTACGTTGGCTGACTACAAT 1020 Query 40870 ATCCAG 40875 || ||| Sbjct 1021 ATTCAG 1026 >seq8650 Length=8768 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||| | || || ||||||||||| || || || |||||| | || || || | Sbjct 4506 ATGCAAGTCTTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCG 4565 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| |||||| || || | || || ||||| |||||| |||| ||| Sbjct 4566 GACACCATCGAAAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAG 4625 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||||| ||| || || || |||| || | || || | |||||||| Sbjct 4626 CAACGTCTCATCTTCGCAGGGAAGCAATTGGAGGATGGTCGTACGTTGGCAGACTACAAT 4685 Query 40870 ATCCAG 40875 || ||| Sbjct 4686 ATTCAG 4691 >seq7966 Length=9287 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||| | || || ||||||||||| || || || |||||| | || || || | Sbjct 5337 ATGCAAGTCTTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCG 5278 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| |||||| || || | || || ||||| |||||| |||| ||| Sbjct 5277 GACACCATCGAAAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAG 5218 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||||| ||| || || || |||| || | || || | |||||||| Sbjct 5217 CAACGTCTCATCTTCGCAGGGAAGCAATTGGAGGATGGTCGTACGTTGGCTGACTACAAT 5158 Query 40870 ATCCAG 40875 || ||| Sbjct 5157 ATTCAG 5152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515017356438160