Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29]
31,341 sequences; 235,798,407 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq2786 100 3e-16
seq27688 98.7 1e-15
seq3049 96.9 4e-15
seq27347 93.3 4e-14
seq13787 91.5 2e-13
seq10902 87.8 2e-12
seq19449 84.2 2e-11
seq8650 84.2 2e-11
seq7966 84.2 2e-11
>seq2786
Length=16508
Score = 100 bits (110), Expect = 3e-16
Identities = 162/233 (70%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 116976 TCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCG 117035
|||| | || || || ||||| || || |||| || | | ||| || | || || |
Sbjct 4388 TCAAGAAAAAAGCTGATTGGGCTCTTCGTTGGACTGCTAGTAAAGAAGCTTCATTTGGTG 4329
Query 117036 AGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCA 117095
| || || | || || || || || ||||| | |||||||| || ||||| || || |
Sbjct 4328 AACGTCTCATTGCTTTTGCAGCAGTTGAGGGTATATTCTTTTCTGGAAGTTTTGCTGCAA 4269
Query 117096 TATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCT 117155
| |||||||| ||||||||||| | ||||| || ||||| || || || | || |
Sbjct 4268 TTTTTTGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAATTT 4209
Query 117156 CCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208
| | || || || || ||| | || ||||| ||||| || ||| | ||||||
Sbjct 4208 CTCGAGATGAAGGACTTCATCGAGATTTTGCTTGTTTACTTTTCCAACATTTG 4156
>seq27688
Length=2484
Score = 98.7 bits (108), Expect = 1e-15
Identities = 163/234 (70%), Gaps = 1/234 (0%)
Strand=Plus/Plus
Query 116976 TCAAAGAGAAG-GCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGC 117034
||||||| || || || ||||| || || |||| || | | ||| || | || ||
Sbjct 159 TCAAAGAAAAAAGCTGATTGGGCTCTTCGTTGGACTGCTAGTAAAGAAGCTTCATTTGGT 218
Query 117035 GAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCC 117094
|| || || | || || || || || ||||| | ||||| || || ||||| || ||
Sbjct 219 GAACGTCTCATTGCTTTTGCCGCAGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCA 278
Query 117095 ATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATC 117154
|| |||||||| ||||||||||| | ||||| || ||||| || || || | ||
Sbjct 279 ATTTTTTGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAATT 338
Query 117155 TCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208
|| | || || || || ||| | || ||||| ||||| || ||| | ||||||
Sbjct 339 TCTCGTGATGAAGGACTTCATCGAGATTTTGCTTGTTTACTTTTCCAACATTTG 392
>seq3049
Length=15854
Score = 96.9 bits (106), Expect = 4e-15
Identities = 161/233 (69%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 116976 TCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCG 117035
|||| | || || || ||||| || || |||| || | | ||| || | || || |
Sbjct 13994 TCAAGAAAAAAGCTGATTGGGCTCTTCGTTGGACTGCTAGTAAAGAAGCTTCATTTGGTG 13935
Query 117036 AGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCA 117095
| || || | || || || || || ||||| | ||||| || || ||||| || || |
Sbjct 13934 AACGTCTTATTGCTTTTGCCGCAGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCAA 13875
Query 117096 TATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCT 117155
| |||||||| ||||||||||| | ||||| || ||||| || || || | || |
Sbjct 13874 TTTTTTGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAATTT 13815
Query 117156 CCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208
| | || || || || ||| | || ||||| ||||| || ||| | ||||||
Sbjct 13814 CTCGTGATGAAGGACTTCATCGAGATTTTGCTTGTTTACTTTTCCAACATTTG 13762
>seq27347
Length=2531
Score = 93.3 bits (102), Expect = 4e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 116993 TGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTC 117052
||||| || || |||| || | | ||| || | || || || || || | || ||
Sbjct 2 TGGGCTCTTCGTTGGACTGCTAGTAAAGAAGCTTCATTTGGTGAACGTCTTATTGCTTTT 61
Query 117053 GCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAA 117112
|| || || ||||| | ||||| || || ||||| || || || |||||||| ||||||
Sbjct 62 GCCGCAGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCAATTTTTTGGCTAAAGAAA 121
Query 117113 CGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTG 117172
||||| | ||||| || ||||| || || || | || || | || || || ||
Sbjct 122 CGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAATTTCTCGTGATGAAGGACTT 181
Query 117173 CATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208
||| | || ||||| ||||| || ||| | ||||||
Sbjct 182 CATCGAGATTTTGCTTGTTTACTTTTCCAACATTTG 217
>seq13787
Length=5932
Score = 91.5 bits (100), Expect = 2e-13
Identities = 160/233 (69%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 116976 TCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCG 117035
|||| | || || || ||||| || || |||| || | | ||| || | || || |
Sbjct 971 TCAAGAAAAAAGCTGATTGGGCTCTTCGTTGGACTGCTAGTAAAGAAGCTTCATTTGGTG 912
Query 117036 AGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCA 117095
| || || | || || || || || ||||| | ||||| || || ||||| || || |
Sbjct 911 AACGTCTCATTGCTTTTGCCGCGGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCAA 852
Query 117096 TATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCT 117155
| |||||||| ||||||||||| ||||| || ||||| || || || | || |
Sbjct 851 TTTTTTGGCTAAAGAAACGCGGTTATATGCCTGGACTGACACAAAGTAATGAATTAATTT 792
Query 117156 CCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208
| | || || || || ||| | || ||||| ||| | || ||| ||||||||
Sbjct 791 CTCGAGATGAAGGACTTCATCGAGATTTTGCTTGTCTACTTTTCCAGCATTTG 739
>seq10902
Length=7311
Score = 87.8 bits (96), Expect = 2e-12
Identities = 131/186 (70%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||| | || || ||||||||||| || || || |||||| | || || || |
Sbjct 5798 ATGCAAGTCTTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCG 5857
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | ||| |||||| || || | || || ||||| |||||| |||| |||
Sbjct 5858 GACACCATCGAAAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAG 5917
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| || |||| ||| || ||||| |||| || | || || | |||||||||
Sbjct 5918 CAACGTCTAATCTTCGCAGGGAAACAATTGGAGGATGGTCGTACGTTGGCCGACTACAAT 5977
Query 40870 ATCCAG 40875
|| |||
Sbjct 5978 ATTCAG 5983
>seq19449
Length=4096
Score = 84.2 bits (92), Expect = 2e-11
Identities = 130/186 (70%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||| | || || ||||||||||| || || || |||||| | || || || |
Sbjct 841 ATGCAAGTCTTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCG 900
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | |||||| || || | || || ||||| |||||| |||| |||
Sbjct 901 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAG 960
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| ||||||| ||| || || ||| |||| || | || || | ||||||||
Sbjct 961 CAACGTCTCATCTTCGCAGGGAAGCAGTTGGAGGATGGTCGTACGTTGGCTGACTACAAT 1020
Query 40870 ATCCAG 40875
|| |||
Sbjct 1021 ATTCAG 1026
>seq8650
Length=8768
Score = 84.2 bits (92), Expect = 2e-11
Identities = 130/186 (70%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||| | || || ||||||||||| || || || |||||| | || || || |
Sbjct 4506 ATGCAAGTCTTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCG 4565
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | ||| |||||| || || | || || ||||| |||||| |||| |||
Sbjct 4566 GACACCATCGAAAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAG 4625
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| ||||||| ||| || || || |||| || | || || | ||||||||
Sbjct 4626 CAACGTCTCATCTTCGCAGGGAAGCAATTGGAGGATGGTCGTACGTTGGCAGACTACAAT 4685
Query 40870 ATCCAG 40875
|| |||
Sbjct 4686 ATTCAG 4691
>seq7966
Length=9287
Score = 84.2 bits (92), Expect = 2e-11
Identities = 130/186 (70%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||| | || || ||||||||||| || || || |||||| | || || || |
Sbjct 5337 ATGCAAGTCTTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCG 5278
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | ||| |||||| || || | || || ||||| |||||| |||| |||
Sbjct 5277 GACACCATCGAAAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAG 5218
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| ||||||| ||| || || || |||| || | || || | ||||||||
Sbjct 5217 CAACGTCTCATCTTCGCAGGGAAGCAATTGGAGGATGGTCGTACGTTGGCTGACTACAAT 5158
Query 40870 ATCCAG 40875
|| |||
Sbjct 5157 ATTCAG 5152
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515017356438160
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