Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq15966 98.7 1e-15 seq9420 98.7 1e-15 seq1871 98.7 1e-15 >seq15966 Length=5121 Score = 98.7 bits (108), Expect = 1e-15 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| ||||||| || || || |||||||| ||| | ||| |||| || | Sbjct 805 ATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAGGCTTCT 864 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| |||| || ||||||||||||||||| ||||| || |||||||| Sbjct 865 GATACCATTGAGAATGTTAAGGCA-AAAATTCAAGATAAAGAGGGTATCCCGCCTGATCA 923 Query 124658 ACA 124660 ||| Sbjct 924 ACA 926 >seq9420 Length=8200 Score = 98.7 bits (108), Expect = 1e-15 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| ||||||| || || || |||||||| ||| | ||| |||| || | Sbjct 7280 ATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAGGCTTCT 7221 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| |||| || ||||||||||||||||| ||||| || |||||||| Sbjct 7220 GATACCATTGAGAATGTTAAGGCA-AAAATTCAAGATAAAGAGGGTATCCCGCCTGATCA 7162 Query 124658 ACA 124660 ||| Sbjct 7161 ACA 7159 >seq1871 Length=19151 Score = 98.7 bits (108), Expect = 1e-15 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| ||||||| || || || |||||||| ||| | ||| |||| || | Sbjct 11468 ATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAGGCTTCT 11527 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| |||| || ||||||||||||||||| ||||| || |||||||| Sbjct 11528 GATACCATTGAGAATGTTAAGGCA-AAAATTCAAGATAAAGAGGGTATCCCGCCTGATCA 11586 Query 124658 ACA 124660 ||| Sbjct 11587 ACA 11589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755160040668800