Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29]
31,341 sequences; 235,798,407 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq15966 98.7 1e-15
seq9420 98.7 1e-15
seq1871 98.7 1e-15
>seq15966
Length=5121
Score = 98.7 bits (108), Expect = 1e-15
Identities = 97/123 (79%), Gaps = 2/123 (2%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || ||| ||||||| || || || |||||||| ||| | ||| |||| || |
Sbjct 805 ATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAGGCTTCT 864
Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||||| ||| ||| |||| || ||||||||||||||||| ||||| || ||||||||
Sbjct 865 GATACCATTGAGAATGTTAAGGCA-AAAATTCAAGATAAAGAGGGTATCCCGCCTGATCA 923
Query 124658 ACA 124660
|||
Sbjct 924 ACA 926
>seq9420
Length=8200
Score = 98.7 bits (108), Expect = 1e-15
Identities = 97/123 (79%), Gaps = 2/123 (2%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || ||| ||||||| || || || |||||||| ||| | ||| |||| || |
Sbjct 7280 ATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAGGCTTCT 7221
Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||||| ||| ||| |||| || ||||||||||||||||| ||||| || ||||||||
Sbjct 7220 GATACCATTGAGAATGTTAAGGCA-AAAATTCAAGATAAAGAGGGTATCCCGCCTGATCA 7162
Query 124658 ACA 124660
|||
Sbjct 7161 ACA 7159
>seq1871
Length=19151
Score = 98.7 bits (108), Expect = 1e-15
Identities = 97/123 (79%), Gaps = 2/123 (2%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || ||| ||||||| || || || |||||||| ||| | ||| |||| || |
Sbjct 11468 ATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAGGCTTCT 11527
Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||||| ||| ||| |||| || ||||||||||||||||| ||||| || ||||||||
Sbjct 11528 GATACCATTGAGAATGTTAAGGCA-AAAATTCAAGATAAAGAGGGTATCCCGCCTGATCA 11586
Query 124658 ACA 124660
|||
Sbjct 11587 ACA 11589
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755160040668800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |