Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29]
31,341 sequences; 235,798,407 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq695 91.5 1e-13
seq5142 86.0 5e-12
seq2634 86.0 5e-12
seq15966 84.2 2e-11
seq9420 84.2 2e-11
seq1871 84.2 2e-11
>seq695
Length=26773
Score = 91.5 bits (100), Expect = 1e-13
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 118614 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACG 118673
||||||||||| ||||| ||||| ||||||||| ||||||| || || | ||||| |
Sbjct 12181 CGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCGATG 12122
Query 118674 GTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATC 118733
|| || | |||||| || | || | |||||| || || ||||| ||||| || |||
Sbjct 12121 GTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTTACGAAGATC 12062
Query 118734 TGCAT 118738
|||||
Sbjct 12061 TGCAT 12057
>seq5142
Length=12213
Score = 86.0 bits (94), Expect = 5e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 118614 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACG 118673
||||||||||| ||||| ||||| ||||||||| ||||||| || || | ||||| |
Sbjct 7445 CGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCGATG 7504
Query 118674 GTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATC 118733
|| || | |||||| || | || | |||||| || || ||||| || || || |||
Sbjct 7505 GTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAGATC 7564
Query 118734 TGCAT 118738
|||||
Sbjct 7565 TGCAT 7569
>seq2634
Length=16880
Score = 86.0 bits (94), Expect = 5e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 118614 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACG 118673
||||||||||| ||||| ||||| ||||||||| ||||||| || || | ||||| |
Sbjct 1905 CGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCGATG 1964
Query 118674 GTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATC 118733
|| || | |||||| || | || | |||||| || || ||||| || || || |||
Sbjct 1965 GTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAGATC 2024
Query 118734 TGCAT 118738
|||||
Sbjct 2025 TGCAT 2029
>seq15966
Length=5121
Score = 84.2 bits (92), Expect = 2e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 118613 ACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGAC 118672
|||||| ||||| || || || ||||| || ||| ||||||| ||||| | || |
Sbjct 930 ACGCTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAAT 871
Query 118673 GGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAAT 118732
||| || | ||| ||||||| || | ||||| ||||| ||||| |||||||||||
Sbjct 870 GGTATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAAT 811
Query 118733 CTGCAT 118738
||||||
Sbjct 810 CTGCAT 805
>seq9420
Length=8200
Score = 84.2 bits (92), Expect = 2e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 118613 ACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGAC 118672
|||||| ||||| || || || ||||| || ||| ||||||| ||||| | || |
Sbjct 7155 ACGCTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAAT 7214
Query 118673 GGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAAT 118732
||| || | ||| ||||||| || | ||||| ||||| ||||| |||||||||||
Sbjct 7215 GGTATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAAT 7274
Query 118733 CTGCAT 118738
||||||
Sbjct 7275 CTGCAT 7280
>seq1871
Length=19151
Score = 84.2 bits (92), Expect = 2e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 118613 ACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGAC 118672
|||||| ||||| || || || ||||| || ||| ||||||| ||||| | || |
Sbjct 11593 ACGCTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAAT 11534
Query 118673 GGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAAT 118732
||| || | ||| ||||||| || | ||||| ||||| ||||| |||||||||||
Sbjct 11533 GGTATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAAT 11474
Query 118733 CTGCAT 118738
||||||
Sbjct 11473 CTGCAT 11468
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433664690479972
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |