Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq19449 86.0 7e-12 seq9 82.4 9e-11 >seq19449 Length=4096 Score = 86.0 bits (94), Expect = 7e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 42999 TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGT 43058 ||||||||||| ||||||| || || | || || | |||||| || ||||| ||||| Sbjct 1025 TGAATATTGTAGTCAGCCAACGTACGACCATCCTCCAACTGCTTCCCTGCGAAGATGAGA 966 Query 43059 CGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACC 43118 || ||||| || | || | | |||||| ||| ||| || |||| || | | Sbjct 965 CGTTGCTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTCTCGATG 906 Query 43119 GTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATT 43178 ||||| | |||||||| | ||||| || || || || ||||| || ||||||| | Sbjct 905 GTGTCCGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACT 846 Query 43179 TGCAT 43183 ||||| Sbjct 845 TGCAT 841 >seq9 Length=66458 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 60047 AACGTTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAG 60106 || ||||| |||||||| |||| | | ||||||||||||| |||||| | |||||||| Sbjct 52578 AATGTTTA--AAAAATTTCCTCCCAGTCCGGGAATCGAACCCGGGTCTCGCACGTGACAG 52635 Query 60107 GCGGACATACTCACCACTATACTA 60130 ||| ||||| |||||||||||| Sbjct 52636 GCGCGGATACTAACCACTATACTA 52659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571593583307480