Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq3049 114 1e-20 seq2786 113 4e-20 seq13787 98.7 9e-16 seq27688 96.9 3e-15 seq27347 96.9 3e-15 >seq3049 Length=15854 Score = 114 bits (126), Expect = 1e-20 Identities = 284/437 (65%), Gaps = 38/437 (9%) Strand=Plus/Plus Query 16217 AAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAAC 16276 || |||| || | || |||||||||||| | ||| | |||||| || | | ||||| Sbjct 13763 AAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAAT 13822 Query 16277 TCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCA 16336 || || ||| || || ||||| | || ||||| || | |||||| || || ||| Sbjct 13823 TCATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCA 13882 Query 16337 AATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTAC 16396 || ||||| ||||||||||| |||||||||||||| |||| | || ||||| | Sbjct 13883 AAACTTCCAGAGAAGAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCAAAT 13942 Query 16397 GTTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTC 16456 | | |||||| | |||| |||||||| ||||||| || | | | | Sbjct 13943 GAAGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCA 14002 Query 16457 ATGTTCTCTATTGCATTAAATAAAT---------------AAtttttttCTTT------- 16494 | | ||| |||||||| || | |||||||| | | Sbjct 14003 AACTCGAATATAGCATTAAACAACTTTGAACTATTAAAAAAATTTTTTAATCTAAAGAAG 14062 Query 16495 --------GCT-------ATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGA 16539 | | |||| |||||||||||| |||| | |||||||||||| Sbjct 14063 GAAATACCGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGA 14122 Query 16540 ATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTAC 16599 ||||||||| || || || || ||||| |||||||| || | |||||| | |||||| || Sbjct 14123 ATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCTTCTGGTATTTGAAC 14182 Query 16600 TTC-AGAGTAAAACCTT 16615 ||| ||| ||||| || Sbjct 14183 TTCTTGAGCAAAACGTT 14199 >seq2786 Length=16508 Score = 113 bits (124), Expect = 4e-20 Identities = 287/444 (65%), Gaps = 46/444 (10%) Strand=Plus/Plus Query 16217 AAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAAC 16276 || |||| || | || |||||||||||| | ||| | |||||| || | | ||||| Sbjct 4157 AAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAAT 4216 Query 16277 TCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCA 16336 || || ||| || || ||||| | || ||||| || | |||||| || || ||| Sbjct 4217 TCATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCA 4276 Query 16337 AATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTAC 16396 || ||||||||||||||||| |||||||| ||||| |||| | || ||||| | Sbjct 4277 AAACTTCCAGAAAAGAATATACCCTCAACTGCTGCAAAAGCAATGAGACGTTCACCAAAT 4336 Query 16397 GTTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTC 16456 | | |||||| | |||| |||||||| ||||||| || | | | || Sbjct 4337 GAAGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATA-AAATC 4395 Query 16457 ATGTTC-TCTATTGCATTAAAT----------------AAATAAtttttttCTTTGCT-- 16497 | ||| ||| ||||||||| ||| ||||| ||| ||| | Sbjct 4396 AAATTCGAATATAGCATTAAATAACTTTGAACTATTAAAAAAAATTTATTTTTTTAATCT 4455 Query 16498 -------------------------ATCTAAAATATAAGTATCTATTAGTAAACTATACA 16532 |||| |||||||||||| |||| | ||||| Sbjct 4456 AAAAAAGGAAATACCGTTCAATTGGATCTTTAATATAAGTATCAATTAATTTTGAATACA 4515 Query 16533 TTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATA 16592 |||||||||||||||| || || || || ||||| |||||||| || | ||| || | || Sbjct 4516 TTTCTGAATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCCTCTGGTA 4575 Query 16593 TTTGTACTTC-AGAGTAAAACCTT 16615 |||| ||||| ||| ||||| || Sbjct 4576 TTTGAACTTCTTGAGCAAAACGTT 4599 >seq13787 Length=5932 Score = 98.7 bits (108), Expect = 9e-16 Identities = 276/431 (64%), Gaps = 47/431 (11%) Strand=Plus/Plus Query 16231 TATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGT 16290 || |||||||||||| | ||| | |||||| || | | ||||| || || ||| Sbjct 754 TAGACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGTGT 813 Query 16291 AAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAA 16350 || || ||||| || ||||| || | |||||| || || ||||| ||||| || Sbjct 814 CAGTCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAA 873 Query 16351 GAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttact 16410 ||||||||| ||||| |||||||| |||| | || ||||| | | | |||||| Sbjct 874 GAATATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCTTTACT 933 Query 16411 ttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTC-TATTG 16469 | |||| |||||||| ||||||| || | | | | || ||| ||| | Sbjct 934 AGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAAT-CAAATTCGAATATAG 992 Query 16470 CATTAAATAAAT-----------------AAtttttttCTTTGCT--------------- 16497 |||||||||| | ||| ||||| ||| | Sbjct 993 CATTAAATAACTTTGAACTATTAAAAAAAAATATTTTTTTTTAATTTAAAGAAGGAAATA 1052 Query 16498 ------------ATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAAT 16545 |||| |||||||||||| |||| | |||||||||||||||||| Sbjct 1053 CCGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAAT 1112 Query 16546 ATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC-AG 16604 ||| || || || || ||||| |||||||| || | ||| || | |||||| ||||| | Sbjct 1113 ATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCCTCTGGTATTTGAACTTCTTG 1172 Query 16605 AGTAAAACCTT 16615 || ||||| || Sbjct 1173 AGCAAAACGTT 1183 >seq27688 Length=2484 Score = 96.9 bits (106), Expect = 3e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 16217 AAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAAC 16276 || |||| || | || |||||||||||| | ||| | |||||| || | | ||||| Sbjct 391 AAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAAT 332 Query 16277 TCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCA 16336 || || ||| || || ||||| | || ||||| || | |||||| || || ||| Sbjct 331 TCATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCA 272 Query 16337 AATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACC 16392 || ||||| ||||||||||| |||||||||||||| |||| | || ||||| Sbjct 271 AAACTTCCAGAGAAGAATATACCCTCAACTGCGGCAAAAGCAATGAGACGTTCACC 216 >seq27347 Length=2531 Score = 96.9 bits (106), Expect = 3e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 16217 AAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAAC 16276 || |||| || | || |||||||||||| | ||| | |||||| || | | ||||| Sbjct 216 AAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAAT 157 Query 16277 TCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCA 16336 || || ||| || || ||||| | || ||||| || | |||||| || || ||| Sbjct 156 TCATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCA 97 Query 16337 AATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACC 16392 || ||||| ||||||||||| |||||||||||||| |||| | || ||||| Sbjct 96 AAACTTCCAGAGAAGAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACC 41 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462330805142600