Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq27688 93.3 4e-14 seq27347 93.3 4e-14 seq3049 93.3 4e-14 seq2786 93.3 4e-14 seq13787 91.5 1e-13 seq5142 87.8 2e-12 >seq27688 Length=2484 Score = 93.3 bits (102), Expect = 4e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034 || || || || ||||| || || ||||||||||| || || || ||||| ||||| ||| Sbjct 225 CTCATTGCTTTTGCCGCAGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCAATTTTT 284 Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094 ||| | ||||||||||| | ||||| || ||||| || || || || || || || Sbjct 285 TGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAATTTCTCGT 344 Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTG 58123 || || || || ||| |||||||| || Sbjct 345 GATGAAGGACTTCATCGAGATTTTGCTTG 373 >seq27347 Length=2531 Score = 93.3 bits (102), Expect = 4e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034 || || || || ||||| || || ||||||||||| || || || ||||| ||||| ||| Sbjct 50 CTTATTGCTTTTGCCGCAGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCAATTTTT 109 Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094 ||| | ||||||||||| | ||||| || ||||| || || || || || || || Sbjct 110 TGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAATTTCTCGT 169 Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTG 58123 || || || || ||| |||||||| || Sbjct 170 GATGAAGGACTTCATCGAGATTTTGCTTG 198 >seq3049 Length=15854 Score = 93.3 bits (102), Expect = 4e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034 || || || || ||||| || || ||||||||||| || || || ||||| ||||| ||| Sbjct 13929 CTTATTGCTTTTGCCGCAGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCAATTTTT 13870 Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094 ||| | ||||||||||| | ||||| || ||||| || || || || || || || Sbjct 13869 TGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAATTTCTCGT 13810 Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTG 58123 || || || || ||| |||||||| || Sbjct 13809 GATGAAGGACTTCATCGAGATTTTGCTTG 13781 >seq2786 Length=16508 Score = 93.3 bits (102), Expect = 4e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034 || || || || || || || || |||||||||||||| || || ||||| ||||| ||| Sbjct 4323 CTCATTGCTTTTGCAGCAGTTGAGGGTATATTCTTTTCTGGAAGTTTTGCTGCAATTTTT 4264 Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094 ||| | ||||||||||| | ||||| || ||||| || || || || || || || Sbjct 4263 TGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAATTTCTCGA 4204 Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTG 58123 || || || || ||| |||||||| || Sbjct 4203 GATGAAGGACTTCATCGAGATTTTGCTTG 4175 >seq13787 Length=5932 Score = 91.5 bits (100), Expect = 1e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034 || || || || ||||| || || ||||||||||| || || || ||||| ||||| ||| Sbjct 906 CTCATTGCTTTTGCCGCGGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCAATTTTT 847 Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094 ||| | ||||||||||| ||||| || ||||| || || || || || || || Sbjct 846 TGGCTAAAGAAACGCGGTTATATGCCTGGACTGACACAAAGTAATGAATTAATTTCTCGA 787 Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTGCCTA 58127 || || || || ||| |||||||| || ||| Sbjct 786 GATGAAGGACTTCATCGAGATTTTGCTTGTCTA 754 >seq5142 Length=12213 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || ||| |||| || || || |||||| |||| ||||| | || Sbjct 6759 ATGCAAATCTTCGTGAAAACTTTGACTGGGAAGACTATCACCCTCGAAGTTGAGGCATCT 6700 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | |||| ||||| | ||| ||||||||||||| | || || || ||| Sbjct 6699 GACACTATAGAAAATGTCAAGGCCAAAATTCAGGACAAGGAAGGCATTCCACCAGATCAG 6640 Query 31313 CAGCGTCT 31320 |||||||| Sbjct 6639 CAGCGTCT 6632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445591765440720