Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq490 118 1e-21 seq1624 109 7e-19 seq30683 105 8e-18 seq16867 105 8e-18 seq20812 86.0 8e-12 >seq490 Length=29575 Score = 118 bits (130), Expect = 1e-21 Identities = 201/290 (69%), Gaps = 6/290 (2%) Strand=Plus/Plus Query 63417 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63476 || |||||||||||||| || || | || |||| ||||| ||||||||||||| Sbjct 6648 TTATTTCCTCCCTGATCAATATAGCGTGCCACAGAATTAAAAACTTGCAACATTGGAATA 6707 Query 63477 ATACCGTTTGATATACCATTGGTACCGGAGAT---ATAGCCTCCACTGGCACGAATATTA 63533 || || || || | ||||| || || ||||| | | ||| | |||||||| | Sbjct 6708 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAA---GCACGAATTGAA 6764 Query 63534 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTG 63593 |||||| || || ||||| || ||| ||| ||||| | || || || |||| || Sbjct 6765 TGAATTGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTT 6824 Query 63594 TCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGG 63653 ||| | || ||||| || ||| | | ||| ||| | |||||| ||| | ||| Sbjct 6825 TCAAAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGT 6884 Query 63654 TGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63703 |||| | || ||||| || ||||| || ||||| ||||| |||||||| Sbjct 6885 GGACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 6934 Score = 102 bits (112), Expect = 1e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 64009 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGG 64068 |||| | ||||| ||||| ||||| |||||||| | || |||||||| || || | | Sbjct 7966 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 8025 Query 64069 CATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 64128 ||||||| || || ||||||| | || |||| ||| || |||| | | ||||||| Sbjct 8026 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCTACTTCAGCCGCCAAATTATCCAATT 8085 Query 64129 CTACCGTTGTTACTCCATTATATATTCCT 64157 | || |||||||||||| |||| || ||| Sbjct 8086 CAACAGTTGTTACTCCAGTATAAATGCCT 8114 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 62076 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 62135 ||||| | ||| ||||| ||||| || ||||| ||| | | |||||||| Sbjct 355 GTACGCAAATAATACATCCCCGTCTTCAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 414 Query 62136 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 62195 || | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| ||||| Sbjct 415 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 474 Query 62196 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTT 62255 || | | | ||| | |||||||| ||||| ||||| ||||||||||| |||| Sbjct 475 AAAGGAGCTCGATCTACTGCCATTTTGATGATTTCACGTTGTGGAATTTCCCAAACAGTT 534 Query 62256 T--TATAAA-CTCGCTTAATATCTTCTGG 62281 | |||||| || || ||||||||||| Sbjct 535 TTGTATAAAGCT---TTGATATCTTCTGG 560 >seq1624 Length=20192 Score = 109 bits (120), Expect = 7e-19 Identities = 199/290 (69%), Gaps = 6/290 (2%) Strand=Plus/Plus Query 63417 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63476 || |||||||||||||| || || | || |||| ||||| ||||||||||||| Sbjct 16035 TTATTTCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATTGGAATA 16094 Query 63477 ATACCGTTTGATATACCATTGGTACCGGAGAT---ATAGCCTCCACTGGCACGAATATTA 63533 || || || || | ||||| || || ||||| | | ||| | |||||||| | Sbjct 16095 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAA---GCACGAATTGAA 16151 Query 63534 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTG 63593 || || || || ||||| || ||| ||| ||||| | || || || |||| || Sbjct 16152 TGGATGGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTT 16211 Query 63594 TCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGG 63653 ||| | || ||||| || ||| | | ||| ||| | |||||| ||| | ||| Sbjct 16212 TCAAAAATTCCTTCAATTGAATCTCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGT 16271 Query 63654 TGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63703 |||| | || ||||| || ||||| || ||||| ||||| |||||||| Sbjct 16272 GGACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 16321 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 64009 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGG 64068 |||| | ||||| || |||||||| |||||||| | || |||||||| || || | | Sbjct 17458 TAAAAACCTTTTTCGTCTCCTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 17517 Query 64069 CATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 64128 |||||||||| || ||||||| | || |||| ||| || |||| | | ||||||| Sbjct 17518 CATAATCCGGGTGAACTGTAGTATTTGAAGCAGCTACTTCAGCCGCCAAATTATCCAATT 17577 Query 64129 CTACCGTTGTTACTCCATTATATATTCCT 64157 | || |||||||||||| |||| || ||| Sbjct 17578 CAACAGTTGTTACTCCAGTATAAATGCCT 17606 Score = 96.9 bits (106), Expect = 4e-15 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 63756 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTT 63815 || ||||| || || |||||||| ||||| ||||| || || ||||| | ||| || Sbjct 16535 TGTATTCCAACAGCAACACGCATCAACATATGCTGTGGCCTCTCAACTACTTTTCCATTG 16594 Query 63816 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTC 63874 ||| ||| | ||| ||| ||| | |||||||| |||||||| | || |||||| || Sbjct 16595 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGAAAA-TC 16653 Query 63875 TCGTTCGTAAATAATAACCGAATTGAGCTT 63904 || || ||||||||||| |||||||| || Sbjct 16654 ACGATCATAAATAATAACTGAATTGAGTTT 16683 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 62076 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 62135 ||||| | ||| |||||||||||||| ||||| ||| | | |||||||| Sbjct 11634 GTACGCAAATAATACATTCCCGTTTTCAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 11693 Query 62136 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 62195 || | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| ||||| Sbjct 11694 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 11753 Query 62196 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTT 62255 || | | | || | |||||||| || || ||||| ||||||||||| |||| Sbjct 11754 AAAGGAGCTCGATCAACTGCCATTTTGATAATTTCACGTTGTGGAATTTCCCAAACAGTT 11813 Query 62256 T--TATAAA-CTCGCTTAATATCTTCTGG 62281 | |||||| || || ||||||||||| Sbjct 11814 TTGTATAAAGCT---TTGATATCTTCTGG 11839 >seq30683 Length=2079 Score = 105 bits (116), Expect = 8e-18 Identities = 198/290 (68%), Gaps = 6/290 (2%) Strand=Plus/Minus Query 63417 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63476 || || ||||||||||| || || | || |||| ||||| ||||||||||||| Sbjct 617 TTATTCCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATTGGAATA 558 Query 63477 ATACCGTTTGATATACCATTGGTACCGGAGAT---ATAGCCTCCACTGGCACGAATATTA 63533 || || || || | ||||| || || ||||| | | ||| | |||||||| | Sbjct 557 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAA---GCACGAATTGAA 501 Query 63534 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTG 63593 || || || || ||||| || ||| ||| ||||| | || || || |||| || Sbjct 500 TGGATGGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTT 441 Query 63594 TCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGG 63653 ||| | || ||||| || ||| | | ||| ||| | |||||| ||| | ||| Sbjct 440 TCAAAAATTCCTTCAATTGAATCTCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGT 381 Query 63654 TGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63703 |||| | || ||||| || ||||| || ||||| ||||| |||||||| Sbjct 380 GGACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 331 >seq16867 Length=4829 Score = 105 bits (116), Expect = 8e-18 Identities = 198/290 (68%), Gaps = 6/290 (2%) Strand=Plus/Plus Query 63417 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63476 || |||||||||||||| || || | || |||| ||||| ||||||||||||| Sbjct 278 TTATTTCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATTGGAATA 337 Query 63477 ATACCGTTTGATATACCATTGGTACCGGAGAT---ATAGCCTCCACTGGCACGAATATTA 63533 || || || || | ||||| || || ||||| | | ||| | |||||||| | Sbjct 338 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAA---GCACGAATTGAA 394 Query 63534 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTG 63593 ||| || || || ||||| || ||| ||| || || | || || || || | || Sbjct 395 TGAATGGAAAGTCCAATTCCTCCAGCCGATTTTGAAATATAAGCACAACGATTAATTGTT 454 Query 63594 TCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGG 63653 ||| | || ||||| || ||| | | ||| ||| | |||||| ||| | ||| Sbjct 455 TCAAAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGT 514 Query 63654 TGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63703 |||| | || ||||| || ||||| || ||||| ||||| |||||||| Sbjct 515 GGACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 564 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 64009 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGG 64068 |||| | ||||| ||||| ||||| |||||||| | || |||||||| || || | | Sbjct 1898 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 1957 Query 64069 CATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 64128 ||||||| || || ||||||| | || || | ||| || |||| | | ||||||| Sbjct 1958 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCCACTTCAGCCGCCAAATTATCCAATT 2017 Query 64129 CTACCGTTGTTACTCCATTATATATTCCT 64157 | || |||||||||||| |||| || ||| Sbjct 2018 CAACAGTTGTTACTCCAGTATAAATGCCT 2046 >seq20812 Length=3765 Score = 86.0 bits (94), Expect = 8e-12 Identities = 146/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 62076 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 62135 ||||| | ||| ||||| || || || ||||| ||| | | |||||||| Sbjct 789 GTACGCAAATAATACATCCCTGTCTTAAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 848 Query 62136 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 62195 || | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| ||||| Sbjct 849 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 908 Query 62196 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTT 62255 || | | | || | |||||||| ||||| ||||| ||||||||||| |||| Sbjct 909 AAAGGAGCTCGATCAACTGCCATTTTGATGATTTCACGTTGTGGAATTTCCCAAACAGTT 968 Query 62256 T--TATAAA-CTCGCTTAATATCTTCTGG 62281 | |||||| || || ||||||||||| Sbjct 969 TTGTATAAAGCT---TTGATATCTTCTGG 994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629570861082480