Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29]
31,341 sequences; 235,798,407 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq490 118 1e-21
seq1624 109 7e-19
seq30683 105 8e-18
seq16867 105 8e-18
seq20812 86.0 8e-12
>seq490
Length=29575
Score = 118 bits (130), Expect = 1e-21
Identities = 201/290 (69%), Gaps = 6/290 (2%)
Strand=Plus/Plus
Query 63417 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63476
|| |||||||||||||| || || | || |||| ||||| |||||||||||||
Sbjct 6648 TTATTTCCTCCCTGATCAATATAGCGTGCCACAGAATTAAAAACTTGCAACATTGGAATA 6707
Query 63477 ATACCGTTTGATATACCATTGGTACCGGAGAT---ATAGCCTCCACTGGCACGAATATTA 63533
|| || || || | ||||| || || ||||| | | ||| | |||||||| |
Sbjct 6708 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAA---GCACGAATTGAA 6764
Query 63534 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTG 63593
|||||| || || ||||| || ||| ||| ||||| | || || || |||| ||
Sbjct 6765 TGAATTGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTT 6824
Query 63594 TCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGG 63653
||| | || ||||| || ||| | | ||| ||| | |||||| ||| | |||
Sbjct 6825 TCAAAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGT 6884
Query 63654 TGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63703
|||| | || ||||| || ||||| || ||||| ||||| ||||||||
Sbjct 6885 GGACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 6934
Score = 102 bits (112), Expect = 1e-16
Identities = 112/149 (75%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 64009 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGG 64068
|||| | ||||| ||||| ||||| |||||||| | || |||||||| || || | |
Sbjct 7966 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 8025
Query 64069 CATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 64128
||||||| || || ||||||| | || |||| ||| || |||| | | |||||||
Sbjct 8026 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCTACTTCAGCCGCCAAATTATCCAATT 8085
Query 64129 CTACCGTTGTTACTCCATTATATATTCCT 64157
| || |||||||||||| |||| || |||
Sbjct 8086 CAACAGTTGTTACTCCAGTATAAATGCCT 8114
Score = 95.1 bits (104), Expect = 2e-14
Identities = 148/209 (71%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 62076 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 62135
||||| | ||| ||||| ||||| || ||||| ||| | | ||||||||
Sbjct 355 GTACGCAAATAATACATCCCCGTCTTCAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 414
Query 62136 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 62195
|| | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| |||||
Sbjct 415 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 474
Query 62196 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTT 62255
|| | | | ||| | |||||||| ||||| ||||| ||||||||||| ||||
Sbjct 475 AAAGGAGCTCGATCTACTGCCATTTTGATGATTTCACGTTGTGGAATTTCCCAAACAGTT 534
Query 62256 T--TATAAA-CTCGCTTAATATCTTCTGG 62281
| |||||| || || |||||||||||
Sbjct 535 TTGTATAAAGCT---TTGATATCTTCTGG 560
>seq1624
Length=20192
Score = 109 bits (120), Expect = 7e-19
Identities = 199/290 (69%), Gaps = 6/290 (2%)
Strand=Plus/Plus
Query 63417 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63476
|| |||||||||||||| || || | || |||| ||||| |||||||||||||
Sbjct 16035 TTATTTCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATTGGAATA 16094
Query 63477 ATACCGTTTGATATACCATTGGTACCGGAGAT---ATAGCCTCCACTGGCACGAATATTA 63533
|| || || || | ||||| || || ||||| | | ||| | |||||||| |
Sbjct 16095 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAA---GCACGAATTGAA 16151
Query 63534 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTG 63593
|| || || || ||||| || ||| ||| ||||| | || || || |||| ||
Sbjct 16152 TGGATGGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTT 16211
Query 63594 TCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGG 63653
||| | || ||||| || ||| | | ||| ||| | |||||| ||| | |||
Sbjct 16212 TCAAAAATTCCTTCAATTGAATCTCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGT 16271
Query 63654 TGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63703
|||| | || ||||| || ||||| || ||||| ||||| ||||||||
Sbjct 16272 GGACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 16321
Score = 107 bits (118), Expect = 2e-18
Identities = 113/149 (76%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 64009 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGG 64068
|||| | ||||| || |||||||| |||||||| | || |||||||| || || | |
Sbjct 17458 TAAAAACCTTTTTCGTCTCCTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 17517
Query 64069 CATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 64128
|||||||||| || ||||||| | || |||| ||| || |||| | | |||||||
Sbjct 17518 CATAATCCGGGTGAACTGTAGTATTTGAAGCAGCTACTTCAGCCGCCAAATTATCCAATT 17577
Query 64129 CTACCGTTGTTACTCCATTATATATTCCT 64157
| || |||||||||||| |||| || |||
Sbjct 17578 CAACAGTTGTTACTCCAGTATAAATGCCT 17606
Score = 96.9 bits (106), Expect = 4e-15
Identities = 113/150 (75%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 63756 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTT 63815
|| ||||| || || |||||||| ||||| ||||| || || ||||| | ||| ||
Sbjct 16535 TGTATTCCAACAGCAACACGCATCAACATATGCTGTGGCCTCTCAACTACTTTTCCATTG 16594
Query 63816 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTC 63874
||| ||| | ||| ||| ||| | |||||||| |||||||| | || |||||| ||
Sbjct 16595 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGAAAA-TC 16653
Query 63875 TCGTTCGTAAATAATAACCGAATTGAGCTT 63904
|| || ||||||||||| |||||||| ||
Sbjct 16654 ACGATCATAAATAATAACTGAATTGAGTTT 16683
Score = 95.1 bits (104), Expect = 2e-14
Identities = 148/209 (71%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 62076 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 62135
||||| | ||| |||||||||||||| ||||| ||| | | ||||||||
Sbjct 11634 GTACGCAAATAATACATTCCCGTTTTCAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 11693
Query 62136 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 62195
|| | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| |||||
Sbjct 11694 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 11753
Query 62196 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTT 62255
|| | | | || | |||||||| || || ||||| ||||||||||| ||||
Sbjct 11754 AAAGGAGCTCGATCAACTGCCATTTTGATAATTTCACGTTGTGGAATTTCCCAAACAGTT 11813
Query 62256 T--TATAAA-CTCGCTTAATATCTTCTGG 62281
| |||||| || || |||||||||||
Sbjct 11814 TTGTATAAAGCT---TTGATATCTTCTGG 11839
>seq30683
Length=2079
Score = 105 bits (116), Expect = 8e-18
Identities = 198/290 (68%), Gaps = 6/290 (2%)
Strand=Plus/Minus
Query 63417 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63476
|| || ||||||||||| || || | || |||| ||||| |||||||||||||
Sbjct 617 TTATTCCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATTGGAATA 558
Query 63477 ATACCGTTTGATATACCATTGGTACCGGAGAT---ATAGCCTCCACTGGCACGAATATTA 63533
|| || || || | ||||| || || ||||| | | ||| | |||||||| |
Sbjct 557 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAA---GCACGAATTGAA 501
Query 63534 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTG 63593
|| || || || ||||| || ||| ||| ||||| | || || || |||| ||
Sbjct 500 TGGATGGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTT 441
Query 63594 TCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGG 63653
||| | || ||||| || ||| | | ||| ||| | |||||| ||| | |||
Sbjct 440 TCAAAAATTCCTTCAATTGAATCTCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGT 381
Query 63654 TGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63703
|||| | || ||||| || ||||| || ||||| ||||| ||||||||
Sbjct 380 GGACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 331
>seq16867
Length=4829
Score = 105 bits (116), Expect = 8e-18
Identities = 198/290 (68%), Gaps = 6/290 (2%)
Strand=Plus/Plus
Query 63417 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63476
|| |||||||||||||| || || | || |||| ||||| |||||||||||||
Sbjct 278 TTATTTCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATTGGAATA 337
Query 63477 ATACCGTTTGATATACCATTGGTACCGGAGAT---ATAGCCTCCACTGGCACGAATATTA 63533
|| || || || | ||||| || || ||||| | | ||| | |||||||| |
Sbjct 338 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAA---GCACGAATTGAA 394
Query 63534 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTG 63593
||| || || || ||||| || ||| ||| || || | || || || || | ||
Sbjct 395 TGAATGGAAAGTCCAATTCCTCCAGCCGATTTTGAAATATAAGCACAACGATTAATTGTT 454
Query 63594 TCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGG 63653
||| | || ||||| || ||| | | ||| ||| | |||||| ||| | |||
Sbjct 455 TCAAAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGT 514
Query 63654 TGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63703
|||| | || ||||| || ||||| || ||||| ||||| ||||||||
Sbjct 515 GGACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 564
Score = 98.7 bits (108), Expect = 1e-15
Identities = 111/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 64009 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGG 64068
|||| | ||||| ||||| ||||| |||||||| | || |||||||| || || | |
Sbjct 1898 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 1957
Query 64069 CATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 64128
||||||| || || ||||||| | || || | ||| || |||| | | |||||||
Sbjct 1958 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCCACTTCAGCCGCCAAATTATCCAATT 2017
Query 64129 CTACCGTTGTTACTCCATTATATATTCCT 64157
| || |||||||||||| |||| || |||
Sbjct 2018 CAACAGTTGTTACTCCAGTATAAATGCCT 2046
>seq20812
Length=3765
Score = 86.0 bits (94), Expect = 8e-12
Identities = 146/209 (70%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 62076 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 62135
||||| | ||| ||||| || || || ||||| ||| | | ||||||||
Sbjct 789 GTACGCAAATAATACATCCCTGTCTTAAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 848
Query 62136 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 62195
|| | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| |||||
Sbjct 849 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 908
Query 62196 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTT 62255
|| | | | || | |||||||| ||||| ||||| ||||||||||| ||||
Sbjct 909 AAAGGAGCTCGATCAACTGCCATTTTGATGATTTCACGTTGTGGAATTTCCCAAACAGTT 968
Query 62256 T--TATAAA-CTCGCTTAATATCTTCTGG 62281
| |||||| || || |||||||||||
Sbjct 969 TTGTATAAAGCT---TTGATATCTTCTGG 994
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629570861082480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |