Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq490 116 5e-21 seq1624 107 3e-18 seq30683 104 3e-17 seq16867 104 3e-17 seq13787 95.1 2e-14 seq2786 95.1 2e-14 seq3049 91.5 2e-13 seq20812 89.7 7e-13 seq9293 86.0 8e-12 >seq490 Length=29575 Score = 116 bits (128), Expect = 5e-21 Identities = 198/287 (69%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 66210 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 66269 || |||||||||||||| || || | || |||| ||||| ||||||||||||| Sbjct 6648 TTATTTCCTCCCTGATCAATATAGCGTGCCACAGAATTAAAAACTTGCAACATTGGAATA 6707 Query 66270 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTA 66329 || ||||| || | ||||| || || ||||| | || |||||||| | | Sbjct 6708 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGA 6767 Query 66330 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 66389 ||||| || || ||||| || ||| ||| ||||| | || || || |||| || ||| Sbjct 6768 ATTGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTTTCA 6827 Query 66390 TAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 66449 | || || || || ||| | | ||| ||| | |||||| ||| | ||| || Sbjct 6828 AAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 6887 Query 66450 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 66496 || | || ||||| || ||||| || ||||| ||||| |||||||| Sbjct 6888 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 6934 Score = 104 bits (114), Expect = 3e-17 Identities = 116/154 (75%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 66802 TAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGG 66861 |||| | ||||| ||||||||||| |||||||| || || ||||| || || | | | Sbjct 7966 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 8025 Query 66862 CATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 66921 ||||||| || || ||||||| | || |||| ||| || |||| | | ||||||| Sbjct 8026 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCTACTTCAGCCGCCAAATTATCCAATT 8085 Query 66922 CTACCGTTGTTACTCCATTATATATTCCT-TGGA 66954 | || |||||||||||| |||| || ||| |||| Sbjct 8086 CAACAGTTGTTACTCCAGTATAAATGCCTCTGGA 8119 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 64869 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 64928 ||||| | ||| ||||| ||||| || ||||| ||| | | |||||||| Sbjct 355 GTACGCAAATAATACATCCCCGTCTTCAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 414 Query 64929 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 64988 || | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| ||||| Sbjct 415 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 474 Query 64989 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 65048 || | | | ||| | |||||||| ||||| ||||||||||||||||| |||| Sbjct 475 AAAGGAGCTCGATCTACTGCCATTTTGATGATTTCACGTTGTGGAATTTCCCAAACAGTT 534 Query 65049 T--TATAAA-CTCGCTTAATATCTTCTGG 65074 | |||||| || || ||||||||||| Sbjct 535 TTGTATAAAGCT---TTGATATCTTCTGG 560 >seq1624 Length=20192 Score = 107 bits (118), Expect = 3e-18 Identities = 196/287 (68%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 66210 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 66269 || |||||||||||||| || || | || |||| ||||| ||||||||||||| Sbjct 16035 TTATTTCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATTGGAATA 16094 Query 66270 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTA 66329 || ||||| || | ||||| || || ||||| | || |||||||| | Sbjct 16095 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGG 16154 Query 66330 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 66389 || || || || ||||| || ||| ||| ||||| | || || || |||| || ||| Sbjct 16155 ATGGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTTTCA 16214 Query 66390 TAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 66449 | || || || || ||| | | ||| ||| | |||||| ||| | ||| || Sbjct 16215 AAAATTCCTTCAATTGAATCTCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 16274 Query 66450 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 66496 || | || ||||| || ||||| || ||||| ||||| |||||||| Sbjct 16275 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 16321 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 64869 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 64928 ||||| | ||| |||||||||||||| ||||| ||| | | |||||||| Sbjct 11634 GTACGCAAATAATACATTCCCGTTTTCAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 11693 Query 64929 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 64988 || | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| ||||| Sbjct 11694 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 11753 Query 64989 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 65048 || | | | || | |||||||| || || ||||||||||||||||| |||| Sbjct 11754 AAAGGAGCTCGATCAACTGCCATTTTGATAATTTCACGTTGTGGAATTTCCCAAACAGTT 11813 Query 65049 T--TATAAA-CTCGCTTAATATCTTCTGG 65074 | |||||| || || ||||||||||| Sbjct 11814 TTGTATAAAGCT---TTGATATCTTCTGG 11839 Score = 98.7 bits (108), Expect = 1e-15 Identities = 115/154 (75%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 66802 TAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGG 66861 |||| | ||||| || || ||||| |||||||| || || ||||| || || | | | Sbjct 17458 TAAAAACCTTTTTCGTCTCCTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 17517 Query 66862 CATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 66921 |||||||||| || ||||||| | || |||| ||| || |||| | | ||||||| Sbjct 17518 CATAATCCGGGTGAACTGTAGTATTTGAAGCAGCTACTTCAGCCGCCAAATTATCCAATT 17577 Query 66922 CTACCGTTGTTACTCCATTATATATTCCT-TGGA 66954 | || |||||||||||| |||| || ||| |||| Sbjct 17578 CAACAGTTGTTACTCCAGTATAAATGCCTCTGGA 17611 Score = 93.3 bits (102), Expect = 6e-14 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 66549 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTT 66608 || ||||| || || |||||||| ||||| ||||| || || ||||| | || || Sbjct 16535 TGTATTCCAACAGCAACACGCATCAACATATGCTGTGGCCTCTCAACTACTTTTCCATTG 16594 Query 66609 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTC 66667 ||| ||| | ||| ||| ||| | |||||||| |||||||| | || |||||| || Sbjct 16595 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGAAAA-TC 16653 Query 66668 TCGTTCGTAAATAATAACCGAGTTGAGTTT 66697 || || ||||||||||| || |||||||| Sbjct 16654 ACGATCATAAATAATAACTGAATTGAGTTT 16683 >seq30683 Length=2079 Score = 104 bits (114), Expect = 3e-17 Identities = 195/287 (68%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 66210 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 66269 || || ||||||||||| || || | || |||| ||||| ||||||||||||| Sbjct 617 TTATTCCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATTGGAATA 558 Query 66270 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTA 66329 || ||||| || | ||||| || || ||||| | || |||||||| | Sbjct 557 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGG 498 Query 66330 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 66389 || || || || ||||| || ||| ||| ||||| | || || || |||| || ||| Sbjct 497 ATGGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTTTCA 438 Query 66390 TAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 66449 | || || || || ||| | | ||| ||| | |||||| ||| | ||| || Sbjct 437 AAAATTCCTTCAATTGAATCTCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 378 Query 66450 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 66496 || | || ||||| || ||||| || ||||| ||||| |||||||| Sbjct 377 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 331 >seq16867 Length=4829 Score = 104 bits (114), Expect = 3e-17 Identities = 195/287 (68%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 66210 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 66269 || |||||||||||||| || || | || |||| ||||| ||||||||||||| Sbjct 278 TTATTTCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATTGGAATA 337 Query 66270 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTA 66329 || ||||| || | ||||| || || ||||| | || |||||||| | | Sbjct 338 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGA 397 Query 66330 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 66389 || || || || ||||| || ||| ||| || || | || || || || | || ||| Sbjct 398 ATGGAAAGTCCAATTCCTCCAGCCGATTTTGAAATATAAGCACAACGATTAATTGTTTCA 457 Query 66390 TAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 66449 | || || || || ||| | | ||| ||| | |||||| ||| | ||| || Sbjct 458 AAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 517 Query 66450 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 66496 || | || ||||| || ||||| || ||||| ||||| |||||||| Sbjct 518 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 564 Score = 98.7 bits (108), Expect = 1e-15 Identities = 115/154 (75%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 66802 TAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGG 66861 |||| | ||||| ||||||||||| |||||||| || || ||||| || || | | | Sbjct 1898 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 1957 Query 66862 CATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 66921 ||||||| || || ||||||| | || || | ||| || |||| | | ||||||| Sbjct 1958 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCCACTTCAGCCGCCAAATTATCCAATT 2017 Query 66922 CTACCGTTGTTACTCCATTATATATTCCT-TGGA 66954 | || |||||||||||| |||| || ||| |||| Sbjct 2018 CAACAGTTGTTACTCCAGTATAAATGCCTCTGGA 2051 >seq13787 Length=5932 Score = 95.1 bits (104), Expect = 2e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||||| ||| |||||||| || ||||||||| |||||||| |||||||| || Sbjct 1065 ATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTTTCAATAGC 1124 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 36537 ||||||||||| || ||||| | |||||| | || || |||||| | ||| ||||| Sbjct 1125 AATTTGAAATCCATAAAAACAACGAGCCTCTGGTATTTGAACTTCTTGAGCAAAACGTTC 1184 >seq2786 Length=16508 Score = 95.1 bits (104), Expect = 2e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||||| ||| |||||||| || ||||||||| |||||||| |||||||| || Sbjct 4481 ATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTTTCAATAGC 4540 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 36537 ||||||||||| || ||||| | |||||| | || || |||||| | ||| ||||| Sbjct 4541 AATTTGAAATCCATAAAAACAACGAGCCTCTGGTATTTGAACTTCTTGAGCAAAACGTTC 4600 Score = 86.0 bits (94), Expect = 8e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 36140 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAAT 36199 ||||||| || | ||||| || ||||| | || || || || |||| | ||||||| Sbjct 4157 AAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAAT 4216 Query 36200 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 36259 || || || ||||| ||||| | || || || || |||||||| || | ||| Sbjct 4217 TCATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCA 4276 Query 36260 AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAG 36306 || |||||||||||| || || || ||||| ||||| ||||| || Sbjct 4277 AAACTTCCAGAAAAGAATATACCCTCAACTGCTGCAAAAGCAATGAG 4323 >seq3049 Length=15854 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||||| ||| |||||||| || ||||||||| |||||||| |||||||| || Sbjct 14081 ATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTTTCAATAGC 14140 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 36537 ||||||||||| || ||||| | ||| || | || || |||||| | ||| ||||| Sbjct 14141 AATTTGAAATCCATAAAAACAACGAGCTTCTGGTATTTGAACTTCTTGAGCAAAACGTTC 14200 >seq20812 Length=3765 Score = 89.7 bits (98), Expect = 7e-13 Identities = 147/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 64869 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 64928 ||||| | ||| ||||| || || || ||||| ||| | | |||||||| Sbjct 789 GTACGCAAATAATACATCCCTGTCTTAAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 848 Query 64929 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 64988 || | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| ||||| Sbjct 849 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 908 Query 64989 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 65048 || | | | || | |||||||| ||||| ||||||||||||||||| |||| Sbjct 909 AAAGGAGCTCGATCAACTGCCATTTTGATGATTTCACGTTGTGGAATTTCCCAAACAGTT 968 Query 65049 T--TATAAA-CTCGCTTAATATCTTCTGG 65074 | |||||| || || ||||||||||| Sbjct 969 TTGTATAAAGCT---TTGATATCTTCTGG 994 >seq9293 Length=8283 Score = 86.0 bits (94), Expect = 8e-12 Identities = 146/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 64869 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 64928 ||||| | ||| ||||| || || || ||||| ||| | | |||||||| Sbjct 5302 GTACGCAAATAATACATCCCTGTCTTAAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 5361 Query 64929 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 64988 || | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| ||||| Sbjct 5362 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 5421 Query 64989 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 65048 || | | | || | |||||||| ||||| ||||||||||||||||| |||| Sbjct 5422 AAAGGAGCTCGATCAACTGCCATTTTGATGATTTCACGTTGTGGAATTTCCCAAACAGTT 5481 Query 65049 T--TATAAA-CTCGCTTAATATCTTCTGG 65074 | |||||| || || || |||||||| Sbjct 5482 TTGTATAAAGCT---TTGATGTCTTCTGG 5507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657914952578440