Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29]
31,341 sequences; 235,798,407 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq490 116 5e-21
seq1624 107 3e-18
seq30683 104 3e-17
seq16867 104 3e-17
seq13787 95.1 2e-14
seq2786 95.1 2e-14
seq3049 91.5 2e-13
seq20812 89.7 7e-13
seq9293 86.0 8e-12
>seq490
Length=29575
Score = 116 bits (128), Expect = 5e-21
Identities = 198/287 (69%), Gaps = 0/287 (0%)
Strand=Plus/Plus
Query 66210 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 66269
|| |||||||||||||| || || | || |||| ||||| |||||||||||||
Sbjct 6648 TTATTTCCTCCCTGATCAATATAGCGTGCCACAGAATTAAAAACTTGCAACATTGGAATA 6707
Query 66270 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTA 66329
|| ||||| || | ||||| || || ||||| | || |||||||| | |
Sbjct 6708 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGA 6767
Query 66330 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 66389
||||| || || ||||| || ||| ||| ||||| | || || || |||| || |||
Sbjct 6768 ATTGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTTTCA 6827
Query 66390 TAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 66449
| || || || || ||| | | ||| ||| | |||||| ||| | ||| ||
Sbjct 6828 AAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 6887
Query 66450 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 66496
|| | || ||||| || ||||| || ||||| ||||| ||||||||
Sbjct 6888 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 6934
Score = 104 bits (114), Expect = 3e-17
Identities = 116/154 (75%), Gaps = 1/154 (1%)
Strand=Plus/Plus
Query 66802 TAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGG 66861
|||| | ||||| ||||||||||| |||||||| || || ||||| || || | | |
Sbjct 7966 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 8025
Query 66862 CATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 66921
||||||| || || ||||||| | || |||| ||| || |||| | | |||||||
Sbjct 8026 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCTACTTCAGCCGCCAAATTATCCAATT 8085
Query 66922 CTACCGTTGTTACTCCATTATATATTCCT-TGGA 66954
| || |||||||||||| |||| || ||| ||||
Sbjct 8086 CAACAGTTGTTACTCCAGTATAAATGCCTCTGGA 8119
Score = 98.7 bits (108), Expect = 1e-15
Identities = 149/209 (71%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 64869 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 64928
||||| | ||| ||||| ||||| || ||||| ||| | | ||||||||
Sbjct 355 GTACGCAAATAATACATCCCCGTCTTCAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 414
Query 64929 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 64988
|| | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| |||||
Sbjct 415 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 474
Query 64989 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 65048
|| | | | ||| | |||||||| ||||| ||||||||||||||||| ||||
Sbjct 475 AAAGGAGCTCGATCTACTGCCATTTTGATGATTTCACGTTGTGGAATTTCCCAAACAGTT 534
Query 65049 T--TATAAA-CTCGCTTAATATCTTCTGG 65074
| |||||| || || |||||||||||
Sbjct 535 TTGTATAAAGCT---TTGATATCTTCTGG 560
>seq1624
Length=20192
Score = 107 bits (118), Expect = 3e-18
Identities = 196/287 (68%), Gaps = 0/287 (0%)
Strand=Plus/Plus
Query 66210 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 66269
|| |||||||||||||| || || | || |||| ||||| |||||||||||||
Sbjct 16035 TTATTTCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATTGGAATA 16094
Query 66270 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTA 66329
|| ||||| || | ||||| || || ||||| | || |||||||| |
Sbjct 16095 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGG 16154
Query 66330 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 66389
|| || || || ||||| || ||| ||| ||||| | || || || |||| || |||
Sbjct 16155 ATGGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTTTCA 16214
Query 66390 TAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 66449
| || || || || ||| | | ||| ||| | |||||| ||| | ||| ||
Sbjct 16215 AAAATTCCTTCAATTGAATCTCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 16274
Query 66450 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 66496
|| | || ||||| || ||||| || ||||| ||||| ||||||||
Sbjct 16275 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 16321
Score = 98.7 bits (108), Expect = 1e-15
Identities = 149/209 (71%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 64869 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 64928
||||| | ||| |||||||||||||| ||||| ||| | | ||||||||
Sbjct 11634 GTACGCAAATAATACATTCCCGTTTTCAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 11693
Query 64929 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 64988
|| | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| |||||
Sbjct 11694 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 11753
Query 64989 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 65048
|| | | | || | |||||||| || || ||||||||||||||||| ||||
Sbjct 11754 AAAGGAGCTCGATCAACTGCCATTTTGATAATTTCACGTTGTGGAATTTCCCAAACAGTT 11813
Query 65049 T--TATAAA-CTCGCTTAATATCTTCTGG 65074
| |||||| || || |||||||||||
Sbjct 11814 TTGTATAAAGCT---TTGATATCTTCTGG 11839
Score = 98.7 bits (108), Expect = 1e-15
Identities = 115/154 (75%), Gaps = 1/154 (1%)
Strand=Plus/Plus
Query 66802 TAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGG 66861
|||| | ||||| || || ||||| |||||||| || || ||||| || || | | |
Sbjct 17458 TAAAAACCTTTTTCGTCTCCTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 17517
Query 66862 CATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 66921
|||||||||| || ||||||| | || |||| ||| || |||| | | |||||||
Sbjct 17518 CATAATCCGGGTGAACTGTAGTATTTGAAGCAGCTACTTCAGCCGCCAAATTATCCAATT 17577
Query 66922 CTACCGTTGTTACTCCATTATATATTCCT-TGGA 66954
| || |||||||||||| |||| || ||| ||||
Sbjct 17578 CAACAGTTGTTACTCCAGTATAAATGCCTCTGGA 17611
Score = 93.3 bits (102), Expect = 6e-14
Identities = 112/150 (75%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 66549 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTT 66608
|| ||||| || || |||||||| ||||| ||||| || || ||||| | || ||
Sbjct 16535 TGTATTCCAACAGCAACACGCATCAACATATGCTGTGGCCTCTCAACTACTTTTCCATTG 16594
Query 66609 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTC 66667
||| ||| | ||| ||| ||| | |||||||| |||||||| | || |||||| ||
Sbjct 16595 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGAAAA-TC 16653
Query 66668 TCGTTCGTAAATAATAACCGAGTTGAGTTT 66697
|| || ||||||||||| || ||||||||
Sbjct 16654 ACGATCATAAATAATAACTGAATTGAGTTT 16683
>seq30683
Length=2079
Score = 104 bits (114), Expect = 3e-17
Identities = 195/287 (68%), Gaps = 0/287 (0%)
Strand=Plus/Minus
Query 66210 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 66269
|| || ||||||||||| || || | || |||| ||||| |||||||||||||
Sbjct 617 TTATTCCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATTGGAATA 558
Query 66270 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTA 66329
|| ||||| || | ||||| || || ||||| | || |||||||| |
Sbjct 557 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGG 498
Query 66330 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 66389
|| || || || ||||| || ||| ||| ||||| | || || || |||| || |||
Sbjct 497 ATGGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTTTCA 438
Query 66390 TAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 66449
| || || || || ||| | | ||| ||| | |||||| ||| | ||| ||
Sbjct 437 AAAATTCCTTCAATTGAATCTCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 378
Query 66450 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 66496
|| | || ||||| || ||||| || ||||| ||||| ||||||||
Sbjct 377 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 331
>seq16867
Length=4829
Score = 104 bits (114), Expect = 3e-17
Identities = 195/287 (68%), Gaps = 0/287 (0%)
Strand=Plus/Plus
Query 66210 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 66269
|| |||||||||||||| || || | || |||| ||||| |||||||||||||
Sbjct 278 TTATTTCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATTGGAATA 337
Query 66270 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTA 66329
|| ||||| || | ||||| || || ||||| | || |||||||| | |
Sbjct 338 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGA 397
Query 66330 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 66389
|| || || || ||||| || ||| ||| || || | || || || || | || |||
Sbjct 398 ATGGAAAGTCCAATTCCTCCAGCCGATTTTGAAATATAAGCACAACGATTAATTGTTTCA 457
Query 66390 TAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 66449
| || || || || ||| | | ||| ||| | |||||| ||| | ||| ||
Sbjct 458 AAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 517
Query 66450 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 66496
|| | || ||||| || ||||| || ||||| ||||| ||||||||
Sbjct 518 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 564
Score = 98.7 bits (108), Expect = 1e-15
Identities = 115/154 (75%), Gaps = 1/154 (1%)
Strand=Plus/Plus
Query 66802 TAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGG 66861
|||| | ||||| ||||||||||| |||||||| || || ||||| || || | | |
Sbjct 1898 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 1957
Query 66862 CATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 66921
||||||| || || ||||||| | || || | ||| || |||| | | |||||||
Sbjct 1958 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCCACTTCAGCCGCCAAATTATCCAATT 2017
Query 66922 CTACCGTTGTTACTCCATTATATATTCCT-TGGA 66954
| || |||||||||||| |||| || ||| ||||
Sbjct 2018 CAACAGTTGTTACTCCAGTATAAATGCCTCTGGA 2051
>seq13787
Length=5932
Score = 95.1 bits (104), Expect = 2e-14
Identities = 93/120 (78%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477
|||||||| ||| |||||||| || ||||||||| |||||||| |||||||| ||
Sbjct 1065 ATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTTTCAATAGC 1124
Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 36537
||||||||||| || ||||| | |||||| | || || |||||| | ||| |||||
Sbjct 1125 AATTTGAAATCCATAAAAACAACGAGCCTCTGGTATTTGAACTTCTTGAGCAAAACGTTC 1184
>seq2786
Length=16508
Score = 95.1 bits (104), Expect = 2e-14
Identities = 93/120 (78%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477
|||||||| ||| |||||||| || ||||||||| |||||||| |||||||| ||
Sbjct 4481 ATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTTTCAATAGC 4540
Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 36537
||||||||||| || ||||| | |||||| | || || |||||| | ||| |||||
Sbjct 4541 AATTTGAAATCCATAAAAACAACGAGCCTCTGGTATTTGAACTTCTTGAGCAAAACGTTC 4600
Score = 86.0 bits (94), Expect = 8e-12
Identities = 119/167 (71%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 36140 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAAT 36199
||||||| || | ||||| || ||||| | || || || || |||| | |||||||
Sbjct 4157 AAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAAT 4216
Query 36200 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 36259
|| || || ||||| ||||| | || || || || |||||||| || | |||
Sbjct 4217 TCATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCA 4276
Query 36260 AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAG 36306
|| |||||||||||| || || || ||||| ||||| ||||| ||
Sbjct 4277 AAACTTCCAGAAAAGAATATACCCTCAACTGCTGCAAAAGCAATGAG 4323
>seq3049
Length=15854
Score = 91.5 bits (100), Expect = 2e-13
Identities = 92/120 (77%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477
|||||||| ||| |||||||| || ||||||||| |||||||| |||||||| ||
Sbjct 14081 ATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTTTCAATAGC 14140
Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 36537
||||||||||| || ||||| | ||| || | || || |||||| | ||| |||||
Sbjct 14141 AATTTGAAATCCATAAAAACAACGAGCTTCTGGTATTTGAACTTCTTGAGCAAAACGTTC 14200
>seq20812
Length=3765
Score = 89.7 bits (98), Expect = 7e-13
Identities = 147/209 (70%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 64869 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 64928
||||| | ||| ||||| || || || ||||| ||| | | ||||||||
Sbjct 789 GTACGCAAATAATACATCCCTGTCTTAAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 848
Query 64929 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 64988
|| | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| |||||
Sbjct 849 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 908
Query 64989 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 65048
|| | | | || | |||||||| ||||| ||||||||||||||||| ||||
Sbjct 909 AAAGGAGCTCGATCAACTGCCATTTTGATGATTTCACGTTGTGGAATTTCCCAAACAGTT 968
Query 65049 T--TATAAA-CTCGCTTAATATCTTCTGG 65074
| |||||| || || |||||||||||
Sbjct 969 TTGTATAAAGCT---TTGATATCTTCTGG 994
>seq9293
Length=8283
Score = 86.0 bits (94), Expect = 8e-12
Identities = 146/209 (70%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 64869 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 64928
||||| | ||| ||||| || || || ||||| ||| | | ||||||||
Sbjct 5302 GTACGCAAATAATACATCCCTGTCTTAAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 5361
Query 64929 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 64988
|| | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| |||||
Sbjct 5362 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 5421
Query 64989 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 65048
|| | | | || | |||||||| ||||| ||||||||||||||||| ||||
Sbjct 5422 AAAGGAGCTCGATCAACTGCCATTTTGATGATTTCACGTTGTGGAATTTCCCAAACAGTT 5481
Query 65049 T--TATAAA-CTCGCTTAATATCTTCTGG 65074
| |||||| || || || ||||||||
Sbjct 5482 TTGTATAAAGCT---TTGATGTCTTCTGG 5507
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657914952578440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |