Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq490 123 4e-23 seq1624 114 2e-20 seq30683 109 8e-19 seq16867 109 8e-19 seq20812 95.1 2e-14 seq9293 89.7 7e-13 >seq490 Length=29575 Score = 123 bits (136), Expect = 4e-23 Identities = 215/313 (69%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 80089 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 80148 || |||||||||||||| || || | || |||| ||||| ||||||||||||| Sbjct 6648 TTATTTCCTCCCTGATCAATATAGCGTGCCACAGAATTAAAAACTTGCAACATTGGAATA 6707 Query 80149 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA 80208 || ||||| || | ||||| || || ||||| | || |||||||| | | Sbjct 6708 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGA 6767 Query 80209 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 80268 ||||| || || ||||| || ||| ||| ||||| | || || || |||| || ||| Sbjct 6768 ATTGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTTTCA 6827 Query 80269 TAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 80328 | || || || || ||| ||| ||| ||| | |||||| ||| | ||| || Sbjct 6828 AAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 6887 Query 80329 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGT 80388 || | || ||||| || ||||| || ||||| ||||| |||||||| || || Sbjct 6888 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCAACGCTCGCCCATG 6947 Query 80389 AGATTGTACGTCT 80401 |||||||| |||| Sbjct 6948 AGATTGTAAGTCT 6960 Score = 107 bits (118), Expect = 3e-18 Identities = 117/154 (76%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 80681 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGG 80740 |||| | ||||| ||||| ||||| |||||||| || || |||||||| || | | | Sbjct 7966 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 8025 Query 80741 CATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 80800 |||||||||| || ||||||| | || |||| ||| || |||| | | ||||||| Sbjct 8026 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCTACTTCAGCCGCCAAATTATCCAATT 8085 Query 80801 CTACCGTTGTTACTCCATTATATATTCCT-TGGA 80833 | || |||||||||||| |||| || ||| |||| Sbjct 8086 CAACAGTTGTTACTCCAGTATAAATGCCTCTGGA 8119 Score = 104 bits (114), Expect = 3e-17 Identities = 150/209 (72%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 78748 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTC 78807 ||||| | ||| ||||| ||||| || ||||| ||| | |||||||||| Sbjct 355 GTACGCAAATAATACATCCCCGTCTTCAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 414 Query 78808 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 78867 || | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| ||||| Sbjct 415 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 474 Query 78868 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 78927 || | | | ||| | |||||||| ||||| ||||||||||||||||| |||| Sbjct 475 AAAGGAGCTCGATCTACTGCCATTTTGATGATTTCACGTTGTGGAATTTCCCAAACAGTT 534 Query 78928 T--TATAAA-CTCGCTTAATATCTTCTGG 78953 | |||||| || || ||||||||||| Sbjct 535 TTGTATAAAGCT---TTGATATCTTCTGG 560 >seq1624 Length=20192 Score = 114 bits (126), Expect = 2e-20 Identities = 213/313 (68%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 80089 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 80148 || |||||||||||||| || || | || |||| ||||| ||||||||||||| Sbjct 16035 TTATTTCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATTGGAATA 16094 Query 80149 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA 80208 || ||||| || | ||||| || || ||||| | || |||||||| | Sbjct 16095 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGG 16154 Query 80209 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 80268 || || || || ||||| || ||| ||| ||||| | || || || |||| || ||| Sbjct 16155 ATGGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTTTCA 16214 Query 80269 TAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 80328 | || || || || ||| ||| ||| ||| | |||||| ||| | ||| || Sbjct 16215 AAAATTCCTTCAATTGAATCTCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 16274 Query 80329 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGT 80388 || | || ||||| || ||||| || ||||| ||||| |||||||| || || Sbjct 16275 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCAACGCTCGCCCATG 16334 Query 80389 AGATTGTACGTCT 80401 |||||||| |||| Sbjct 16335 AGATTGTAAGTCT 16347 Score = 104 bits (114), Expect = 3e-17 Identities = 150/209 (72%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 78748 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTC 78807 ||||| | ||| |||||||||||||| ||||| ||| | |||||||||| Sbjct 11634 GTACGCAAATAATACATTCCCGTTTTCAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 11693 Query 78808 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 78867 || | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| ||||| Sbjct 11694 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 11753 Query 78868 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 78927 || | | | || | |||||||| || || ||||||||||||||||| |||| Sbjct 11754 AAAGGAGCTCGATCAACTGCCATTTTGATAATTTCACGTTGTGGAATTTCCCAAACAGTT 11813 Query 78928 T--TATAAA-CTCGCTTAATATCTTCTGG 78953 | |||||| || || ||||||||||| Sbjct 11814 TTGTATAAAGCT---TTGATATCTTCTGG 11839 Score = 104 bits (114), Expect = 3e-17 Identities = 116/154 (75%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 80681 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGG 80740 |||| | ||||| || |||||||| |||||||| || || |||||||| || | | | Sbjct 17458 TAAAAACCTTTTTCGTCTCCTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 17517 Query 80741 CATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 80800 ||||||| || || ||||||| | || |||| ||| || |||| | | ||||||| Sbjct 17518 CATAATCCGGGTGAACTGTAGTATTTGAAGCAGCTACTTCAGCCGCCAAATTATCCAATT 17577 Query 80801 CTACCGTTGTTACTCCATTATATATTCCT-TGGA 80833 | || |||||||||||| |||| || ||| |||| Sbjct 17578 CAACAGTTGTTACTCCAGTATAAATGCCTCTGGA 17611 Score = 102 bits (112), Expect = 1e-16 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 80428 TGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTT 80487 || ||||| || || |||||||| ||||| ||||| || || ||||| | || ||| Sbjct 16535 TGTATTCCAACAGCAACACGCATCAACATATGCTGTGGCCTCTCAACTACTTTTCCATTG 16594 Query 80488 ATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTC 80546 ||| ||| | ||||||| ||| | |||||||| |||||||| | || |||||| || Sbjct 16595 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGAAAA-TC 16653 Query 80547 TCGTTCGTAAATAATAACCGAGTTGAGTTT 80576 || || ||||||||||| || |||||||| Sbjct 16654 ACGATCATAAATAATAACTGAATTGAGTTT 16683 >seq30683 Length=2079 Score = 109 bits (120), Expect = 8e-19 Identities = 212/313 (68%), Gaps = 0/313 (0%) Strand=Plus/Minus Query 80089 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 80148 || || ||||||||||| || || | || |||| ||||| ||||||||||||| Sbjct 617 TTATTCCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATTGGAATA 558 Query 80149 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA 80208 || ||||| || | ||||| || || ||||| | || |||||||| | Sbjct 557 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGG 498 Query 80209 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 80268 || || || || ||||| || ||| ||| ||||| | || || || |||| || ||| Sbjct 497 ATGGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTTTCA 438 Query 80269 TAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 80328 | || || || || ||| ||| ||| ||| | |||||| ||| | ||| || Sbjct 437 AAAATTCCTTCAATTGAATCTCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 378 Query 80329 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGT 80388 || | || ||||| || ||||| || ||||| ||||| |||||||| || || Sbjct 377 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCAACGCTCGCCCATG 318 Query 80389 AGATTGTACGTCT 80401 |||||||| |||| Sbjct 317 AGATTGTAAGTCT 305 >seq16867 Length=4829 Score = 109 bits (120), Expect = 8e-19 Identities = 212/313 (68%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 80089 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 80148 || |||||||||||||| || || | || |||| ||||| ||||||||||||| Sbjct 278 TTATTTCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATTGGAATA 337 Query 80149 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA 80208 || ||||| || | ||||| || || ||||| | || |||||||| | | Sbjct 338 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGA 397 Query 80209 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 80268 || || || || ||||| || ||| ||| || || | || || || || | || ||| Sbjct 398 ATGGAAAGTCCAATTCCTCCAGCCGATTTTGAAATATAAGCACAACGATTAATTGTTTCA 457 Query 80269 TAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 80328 | || || || || ||| ||| ||| ||| | |||||| ||| | ||| || Sbjct 458 AAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 517 Query 80329 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGT 80388 || | || ||||| || ||||| || ||||| ||||| |||||||| || || Sbjct 518 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCAACGCTCGCCCATG 577 Query 80389 AGATTGTACGTCT 80401 |||||||| |||| Sbjct 578 AGATTGTAAGTCT 590 Score = 104 bits (114), Expect = 3e-17 Identities = 116/154 (75%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 80681 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGG 80740 |||| | ||||| ||||| ||||| |||||||| || || |||||||| || | | | Sbjct 1898 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 1957 Query 80741 CATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 80800 |||||||||| || ||||||| | || || | ||| || |||| | | ||||||| Sbjct 1958 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCCACTTCAGCCGCCAAATTATCCAATT 2017 Query 80801 CTACCGTTGTTACTCCATTATATATTCCT-TGGA 80833 | || |||||||||||| |||| || ||| |||| Sbjct 2018 CAACAGTTGTTACTCCAGTATAAATGCCTCTGGA 2051 >seq20812 Length=3765 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 78748 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTC 78807 ||||| | ||| ||||| || || || ||||| ||| | |||||||||| Sbjct 789 GTACGCAAATAATACATCCCTGTCTTAAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 848 Query 78808 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 78867 || | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| ||||| Sbjct 849 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 908 Query 78868 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 78927 || | | | || | |||||||| ||||| ||||||||||||||||| |||| Sbjct 909 AAAGGAGCTCGATCAACTGCCATTTTGATGATTTCACGTTGTGGAATTTCCCAAACAGTT 968 Query 78928 T--TATAAA-CTCGCTTAATATCTTCTGG 78953 | |||||| || || ||||||||||| Sbjct 969 TTGTATAAAGCT---TTGATATCTTCTGG 994 >seq9293 Length=8283 Score = 89.7 bits (98), Expect = 7e-13 Identities = 147/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 78748 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTC 78807 ||||| | ||| ||||| || || || ||||| ||| | |||||||||| Sbjct 5302 GTACGCAAATAATACATCCCTGTCTTAAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 5361 Query 78808 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 78867 || | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| ||||| Sbjct 5362 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 5421 Query 78868 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 78927 || | | | || | |||||||| ||||| ||||||||||||||||| |||| Sbjct 5422 AAAGGAGCTCGATCAACTGCCATTTTGATGATTTCACGTTGTGGAATTTCCCAAACAGTT 5481 Query 78928 T--TATAAA-CTCGCTTAATATCTTCTGG 78953 | |||||| || || || |||||||| Sbjct 5482 TTGTATAAAGCT---TTGATGTCTTCTGG 5507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717987409219240