Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29]
31,341 sequences; 235,798,407 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq490 123 4e-23
seq1624 114 2e-20
seq30683 109 8e-19
seq16867 109 8e-19
seq20812 95.1 2e-14
seq9293 89.7 7e-13
>seq490
Length=29575
Score = 123 bits (136), Expect = 4e-23
Identities = 215/313 (69%), Gaps = 0/313 (0%)
Strand=Plus/Plus
Query 80089 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 80148
|| |||||||||||||| || || | || |||| ||||| |||||||||||||
Sbjct 6648 TTATTTCCTCCCTGATCAATATAGCGTGCCACAGAATTAAAAACTTGCAACATTGGAATA 6707
Query 80149 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA 80208
|| ||||| || | ||||| || || ||||| | || |||||||| | |
Sbjct 6708 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGA 6767
Query 80209 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 80268
||||| || || ||||| || ||| ||| ||||| | || || || |||| || |||
Sbjct 6768 ATTGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTTTCA 6827
Query 80269 TAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 80328
| || || || || ||| ||| ||| ||| | |||||| ||| | ||| ||
Sbjct 6828 AAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 6887
Query 80329 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGT 80388
|| | || ||||| || ||||| || ||||| ||||| |||||||| || ||
Sbjct 6888 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCAACGCTCGCCCATG 6947
Query 80389 AGATTGTACGTCT 80401
|||||||| ||||
Sbjct 6948 AGATTGTAAGTCT 6960
Score = 107 bits (118), Expect = 3e-18
Identities = 117/154 (76%), Gaps = 1/154 (1%)
Strand=Plus/Plus
Query 80681 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGG 80740
|||| | ||||| ||||| ||||| |||||||| || || |||||||| || | | |
Sbjct 7966 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 8025
Query 80741 CATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 80800
|||||||||| || ||||||| | || |||| ||| || |||| | | |||||||
Sbjct 8026 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCTACTTCAGCCGCCAAATTATCCAATT 8085
Query 80801 CTACCGTTGTTACTCCATTATATATTCCT-TGGA 80833
| || |||||||||||| |||| || ||| ||||
Sbjct 8086 CAACAGTTGTTACTCCAGTATAAATGCCTCTGGA 8119
Score = 104 bits (114), Expect = 3e-17
Identities = 150/209 (72%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 78748 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTC 78807
||||| | ||| ||||| ||||| || ||||| ||| | ||||||||||
Sbjct 355 GTACGCAAATAATACATCCCCGTCTTCAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 414
Query 78808 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 78867
|| | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| |||||
Sbjct 415 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 474
Query 78868 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 78927
|| | | | ||| | |||||||| ||||| ||||||||||||||||| ||||
Sbjct 475 AAAGGAGCTCGATCTACTGCCATTTTGATGATTTCACGTTGTGGAATTTCCCAAACAGTT 534
Query 78928 T--TATAAA-CTCGCTTAATATCTTCTGG 78953
| |||||| || || |||||||||||
Sbjct 535 TTGTATAAAGCT---TTGATATCTTCTGG 560
>seq1624
Length=20192
Score = 114 bits (126), Expect = 2e-20
Identities = 213/313 (68%), Gaps = 0/313 (0%)
Strand=Plus/Plus
Query 80089 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 80148
|| |||||||||||||| || || | || |||| ||||| |||||||||||||
Sbjct 16035 TTATTTCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATTGGAATA 16094
Query 80149 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA 80208
|| ||||| || | ||||| || || ||||| | || |||||||| |
Sbjct 16095 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGG 16154
Query 80209 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 80268
|| || || || ||||| || ||| ||| ||||| | || || || |||| || |||
Sbjct 16155 ATGGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTTTCA 16214
Query 80269 TAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 80328
| || || || || ||| ||| ||| ||| | |||||| ||| | ||| ||
Sbjct 16215 AAAATTCCTTCAATTGAATCTCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 16274
Query 80329 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGT 80388
|| | || ||||| || ||||| || ||||| ||||| |||||||| || ||
Sbjct 16275 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCAACGCTCGCCCATG 16334
Query 80389 AGATTGTACGTCT 80401
|||||||| ||||
Sbjct 16335 AGATTGTAAGTCT 16347
Score = 104 bits (114), Expect = 3e-17
Identities = 150/209 (72%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 78748 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTC 78807
||||| | ||| |||||||||||||| ||||| ||| | ||||||||||
Sbjct 11634 GTACGCAAATAATACATTCCCGTTTTCAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 11693
Query 78808 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 78867
|| | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| |||||
Sbjct 11694 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 11753
Query 78868 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 78927
|| | | | || | |||||||| || || ||||||||||||||||| ||||
Sbjct 11754 AAAGGAGCTCGATCAACTGCCATTTTGATAATTTCACGTTGTGGAATTTCCCAAACAGTT 11813
Query 78928 T--TATAAA-CTCGCTTAATATCTTCTGG 78953
| |||||| || || |||||||||||
Sbjct 11814 TTGTATAAAGCT---TTGATATCTTCTGG 11839
Score = 104 bits (114), Expect = 3e-17
Identities = 116/154 (75%), Gaps = 1/154 (1%)
Strand=Plus/Plus
Query 80681 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGG 80740
|||| | ||||| || |||||||| |||||||| || || |||||||| || | | |
Sbjct 17458 TAAAAACCTTTTTCGTCTCCTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 17517
Query 80741 CATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 80800
||||||| || || ||||||| | || |||| ||| || |||| | | |||||||
Sbjct 17518 CATAATCCGGGTGAACTGTAGTATTTGAAGCAGCTACTTCAGCCGCCAAATTATCCAATT 17577
Query 80801 CTACCGTTGTTACTCCATTATATATTCCT-TGGA 80833
| || |||||||||||| |||| || ||| ||||
Sbjct 17578 CAACAGTTGTTACTCCAGTATAAATGCCTCTGGA 17611
Score = 102 bits (112), Expect = 1e-16
Identities = 114/150 (76%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 80428 TGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTT 80487
|| ||||| || || |||||||| ||||| ||||| || || ||||| | || |||
Sbjct 16535 TGTATTCCAACAGCAACACGCATCAACATATGCTGTGGCCTCTCAACTACTTTTCCATTG 16594
Query 80488 ATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTC 80546
||| ||| | ||||||| ||| | |||||||| |||||||| | || |||||| ||
Sbjct 16595 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGAAAA-TC 16653
Query 80547 TCGTTCGTAAATAATAACCGAGTTGAGTTT 80576
|| || ||||||||||| || ||||||||
Sbjct 16654 ACGATCATAAATAATAACTGAATTGAGTTT 16683
>seq30683
Length=2079
Score = 109 bits (120), Expect = 8e-19
Identities = 212/313 (68%), Gaps = 0/313 (0%)
Strand=Plus/Minus
Query 80089 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 80148
|| || ||||||||||| || || | || |||| ||||| |||||||||||||
Sbjct 617 TTATTCCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATTGGAATA 558
Query 80149 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA 80208
|| ||||| || | ||||| || || ||||| | || |||||||| |
Sbjct 557 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGG 498
Query 80209 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 80268
|| || || || ||||| || ||| ||| ||||| | || || || |||| || |||
Sbjct 497 ATGGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTTTCA 438
Query 80269 TAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 80328
| || || || || ||| ||| ||| ||| | |||||| ||| | ||| ||
Sbjct 437 AAAATTCCTTCAATTGAATCTCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 378
Query 80329 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGT 80388
|| | || ||||| || ||||| || ||||| ||||| |||||||| || ||
Sbjct 377 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCAACGCTCGCCCATG 318
Query 80389 AGATTGTACGTCT 80401
|||||||| ||||
Sbjct 317 AGATTGTAAGTCT 305
>seq16867
Length=4829
Score = 109 bits (120), Expect = 8e-19
Identities = 212/313 (68%), Gaps = 0/313 (0%)
Strand=Plus/Plus
Query 80089 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 80148
|| |||||||||||||| || || | || |||| ||||| |||||||||||||
Sbjct 278 TTATTTCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATTGGAATA 337
Query 80149 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTA 80208
|| ||||| || | ||||| || || ||||| | || |||||||| | |
Sbjct 338 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGA 397
Query 80209 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 80268
|| || || || ||||| || ||| ||| || || | || || || || | || |||
Sbjct 398 ATGGAAAGTCCAATTCCTCCAGCCGATTTTGAAATATAAGCACAACGATTAATTGTTTCA 457
Query 80269 TAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 80328
| || || || || ||| ||| ||| ||| | |||||| ||| | ||| ||
Sbjct 458 AAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 517
Query 80329 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGT 80388
|| | || ||||| || ||||| || ||||| ||||| |||||||| || ||
Sbjct 518 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCAACGCTCGCCCATG 577
Query 80389 AGATTGTACGTCT 80401
|||||||| ||||
Sbjct 578 AGATTGTAAGTCT 590
Score = 104 bits (114), Expect = 3e-17
Identities = 116/154 (75%), Gaps = 1/154 (1%)
Strand=Plus/Plus
Query 80681 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGG 80740
|||| | ||||| ||||| ||||| |||||||| || || |||||||| || | | |
Sbjct 1898 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 1957
Query 80741 CATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 80800
|||||||||| || ||||||| | || || | ||| || |||| | | |||||||
Sbjct 1958 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCCACTTCAGCCGCCAAATTATCCAATT 2017
Query 80801 CTACCGTTGTTACTCCATTATATATTCCT-TGGA 80833
| || |||||||||||| |||| || ||| ||||
Sbjct 2018 CAACAGTTGTTACTCCAGTATAAATGCCTCTGGA 2051
>seq20812
Length=3765
Score = 95.1 bits (104), Expect = 2e-14
Identities = 148/209 (71%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 78748 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTC 78807
||||| | ||| ||||| || || || ||||| ||| | ||||||||||
Sbjct 789 GTACGCAAATAATACATCCCTGTCTTAAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 848
Query 78808 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 78867
|| | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| |||||
Sbjct 849 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 908
Query 78868 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 78927
|| | | | || | |||||||| ||||| ||||||||||||||||| ||||
Sbjct 909 AAAGGAGCTCGATCAACTGCCATTTTGATGATTTCACGTTGTGGAATTTCCCAAACAGTT 968
Query 78928 T--TATAAA-CTCGCTTAATATCTTCTGG 78953
| |||||| || || |||||||||||
Sbjct 969 TTGTATAAAGCT---TTGATATCTTCTGG 994
>seq9293
Length=8283
Score = 89.7 bits (98), Expect = 7e-13
Identities = 147/209 (70%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 78748 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTC 78807
||||| | ||| ||||| || || || ||||| ||| | ||||||||||
Sbjct 5302 GTACGCAAATAATACATCCCTGTCTTAAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 5361
Query 78808 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 78867
|| | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| |||||
Sbjct 5362 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 5421
Query 78868 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 78927
|| | | | || | |||||||| ||||| ||||||||||||||||| ||||
Sbjct 5422 AAAGGAGCTCGATCAACTGCCATTTTGATGATTTCACGTTGTGGAATTTCCCAAACAGTT 5481
Query 78928 T--TATAAA-CTCGCTTAATATCTTCTGG 78953
| |||||| || || || ||||||||
Sbjct 5482 TTGTATAAAGCT---TTGATGTCTTCTGG 5507
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 717987409219240
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