Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29]
31,341 sequences; 235,798,407 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq2786 159 3e-34
seq3049 145 7e-30
seq27688 143 3e-29
seq13787 138 1e-27
seq27347 129 6e-25
>seq2786
Length=16508
Score = 159 bits (176), Expect = 3e-34
Identities = 192/261 (74%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 13856 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13915
||||| |||| |||||| |||||||| | |||||| || ||||||| | ||| | |||
Sbjct 4159 ATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTC 4218
Query 13916 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975
|| ||| | ||| ||||| || || ||||| |||| |||||| |||||||||||
Sbjct 4219 ATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAA 4278
Query 13976 TGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGA 14035
|| ||||||||||| ||||||||||| ||||| || || | ||||| ||||| ||
Sbjct 4279 ACTTCCAGAAAAGAATATACCCTCAACTGCTGCAAAAGCAATGAGACGTTCACCAAATGA 4338
Query 14036 TGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCAT 14095
|||| ||| | | |||| |||||| |||| |||||| || |||||||| |
Sbjct 4339 AGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAA 4398
Query 14096 TGTTTCAATAGCATTAAATAA 14116
| ||||||||||||||
Sbjct 4399 TTCGAATATAGCATTAAATAA 4419
>seq3049
Length=15854
Score = 145 bits (160), Expect = 7e-30
Identities = 191/263 (73%), Gaps = 4/263 (2%)
Strand=Plus/Plus
Query 13856 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13915
||||| |||| |||||| |||||||| | |||||| || ||||| | | ||| | |||
Sbjct 13765 ATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTC 13824
Query 13916 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975
|| ||| | ||| ||||| || || ||||| |||| |||||| |||||||||||
Sbjct 13825 ATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAA 13884
Query 13976 TGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGA 14035
|| || |||||||| ||||||||||| ||||| || || | ||||| ||||| ||
Sbjct 13885 ACTTCCAGAGAAGAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCAAATGA 13944
Query 14036 TGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCA- 14094
|||| ||| | | |||| |||||| |||| |||||| || |||||||| |
Sbjct 13945 AGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAA 14004
Query 14095 -TTGTTTCAATAGCATTAAATAA 14116
| | | ||||||||||| ||
Sbjct 14005 CTCGAAT--ATAGCATTAAACAA 14025
>seq27688
Length=2484
Score = 143 bits (158), Expect = 3e-29
Identities = 192/264 (73%), Gaps = 5/264 (2%)
Strand=Plus/Minus
Query 13856 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13915
||||| |||| |||||| |||||||| | |||||| || ||||| | | ||| | |||
Sbjct 389 ATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTC 330
Query 13916 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975
|| ||| | ||| ||||| || || ||||| |||| |||||| |||||||||||
Sbjct 329 ATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAA 270
Query 13976 TGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGA 14035
|| || |||||||| ||||||||||| ||||| || || | ||||| ||||| ||
Sbjct 269 ACTTCCAGAGAAGAATATACCCTCAACTGCGGCAAAAGCAATGAGACGTTCACCAAATGA 210
Query 14036 TGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttt-tttAATAAAATCCA 14094
|||| ||| | | |||| |||||| |||| |||||| ||| |||||||| |
Sbjct 209 AGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTTGATAAAATCAA 150
Query 14095 --TTGTTTCAATAGCATTAAATAA 14116
| | | ||||||||||| ||
Sbjct 149 ACTCGAAT--ATAGCATTAAACAA 128
Score = 87.8 bits (96), Expect = 2e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 13554 TCGTCTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAG 13613
||||| | | | |||||||| ||| || ||||||||| |||| | || || || |||
Sbjct 1025 TCGTCATCGGTTGAAATAACCCCCGCCTTCTGATATTCAGAAACTTTCTTCTCGAAAAAG 966
Query 13614 TTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661
||||| || ||||| | || ||||| |||||||||||||| ||||||
Sbjct 965 TTAGTCTTCCCTTCAATAGAAATATTCTCCATAAAATCAAAAGGATTT 918
>seq13787
Length=5932
Score = 138 bits (152), Expect = 1e-27
Identities = 183/254 (72%), Gaps = 0/254 (0%)
Strand=Plus/Plus
Query 13863 AAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAA 13922
|||| || ||| |||||||| | |||||| || ||||||| | ||| | ||| ||
Sbjct 749 AAAAGTAGACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTT 808
Query 13923 AATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCG 13982
||| | ||| ||||| | || ||||| |||| |||||| ||||||||||| ||
Sbjct 809 TGTGTCAGTCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCA 868
Query 13983 GAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTT 14042
|| |||||||| |||||||| || ||||| || || | ||||| ||||| || |||| |
Sbjct 869 GAGAAGAATATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCT 928
Query 14043 TTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCA 14102
|| | | |||| |||||| |||| |||||| || |||||||| | |
Sbjct 929 TTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAATTCGAAT 988
Query 14103 ATAGCATTAAATAA 14116
||||||||||||||
Sbjct 989 ATAGCATTAAATAA 1002
>seq27347
Length=2531
Score = 129 bits (142), Expect = 6e-25
Identities = 142/189 (75%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 13856 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13915
||||| |||| |||||| |||||||| | |||||| || ||||| | | ||| | |||
Sbjct 214 ATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTC 155
Query 13916 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975
|| ||| | ||| ||||| || || ||||| |||| |||||| |||||||||||
Sbjct 154 ATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAA 95
Query 13976 TGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGA 14035
|| || |||||||| ||||||||||| ||||| || || | ||||| ||||| ||
Sbjct 94 ACTTCCAGAGAAGAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCAAATGA 35
Query 14036 TGCTTTTTT 14044
|||| |||
Sbjct 34 AGCTTCTTT 26
Score = 84.2 bits (92), Expect = 2e-11
Identities = 76/96 (79%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625
|||||||| ||| || ||||||||| |||| | || || || |||||||| || |||
Sbjct 835 GAAATAACCCCCGCCTTCTGATATTCAGAAACTTTCTTCTCGAAAAAGTTAGTCTTCCCT 776
Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661
|| | || ||||| |||||||||||||| ||||||
Sbjct 775 TCAATAGAAATATTCTCCATAAAATCAAAAGGATTT 740
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479540060559400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |