Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq2786 159 3e-34 seq3049 145 7e-30 seq27688 143 3e-29 seq13787 138 1e-27 seq27347 129 6e-25 >seq2786 Length=16508 Score = 159 bits (176), Expect = 3e-34 Identities = 192/261 (74%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 13856 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13915 ||||| |||| |||||| |||||||| | |||||| || ||||||| | ||| | ||| Sbjct 4159 ATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTC 4218 Query 13916 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975 || ||| | ||| ||||| || || ||||| |||| |||||| ||||||||||| Sbjct 4219 ATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAA 4278 Query 13976 TGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGA 14035 || ||||||||||| ||||||||||| ||||| || || | ||||| ||||| || Sbjct 4279 ACTTCCAGAAAAGAATATACCCTCAACTGCTGCAAAAGCAATGAGACGTTCACCAAATGA 4338 Query 14036 TGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCAT 14095 |||| ||| | | |||| |||||| |||| |||||| || |||||||| | Sbjct 4339 AGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAA 4398 Query 14096 TGTTTCAATAGCATTAAATAA 14116 | |||||||||||||| Sbjct 4399 TTCGAATATAGCATTAAATAA 4419 >seq3049 Length=15854 Score = 145 bits (160), Expect = 7e-30 Identities = 191/263 (73%), Gaps = 4/263 (2%) Strand=Plus/Plus Query 13856 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13915 ||||| |||| |||||| |||||||| | |||||| || ||||| | | ||| | ||| Sbjct 13765 ATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTC 13824 Query 13916 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975 || ||| | ||| ||||| || || ||||| |||| |||||| ||||||||||| Sbjct 13825 ATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAA 13884 Query 13976 TGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGA 14035 || || |||||||| ||||||||||| ||||| || || | ||||| ||||| || Sbjct 13885 ACTTCCAGAGAAGAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCAAATGA 13944 Query 14036 TGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCA- 14094 |||| ||| | | |||| |||||| |||| |||||| || |||||||| | Sbjct 13945 AGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAA 14004 Query 14095 -TTGTTTCAATAGCATTAAATAA 14116 | | | ||||||||||| || Sbjct 14005 CTCGAAT--ATAGCATTAAACAA 14025 >seq27688 Length=2484 Score = 143 bits (158), Expect = 3e-29 Identities = 192/264 (73%), Gaps = 5/264 (2%) Strand=Plus/Minus Query 13856 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13915 ||||| |||| |||||| |||||||| | |||||| || ||||| | | ||| | ||| Sbjct 389 ATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTC 330 Query 13916 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975 || ||| | ||| ||||| || || ||||| |||| |||||| ||||||||||| Sbjct 329 ATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAA 270 Query 13976 TGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGA 14035 || || |||||||| ||||||||||| ||||| || || | ||||| ||||| || Sbjct 269 ACTTCCAGAGAAGAATATACCCTCAACTGCGGCAAAAGCAATGAGACGTTCACCAAATGA 210 Query 14036 TGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttt-tttAATAAAATCCA 14094 |||| ||| | | |||| |||||| |||| |||||| ||| |||||||| | Sbjct 209 AGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTTGATAAAATCAA 150 Query 14095 --TTGTTTCAATAGCATTAAATAA 14116 | | | ||||||||||| || Sbjct 149 ACTCGAAT--ATAGCATTAAACAA 128 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 13554 TCGTCTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAG 13613 ||||| | | | |||||||| ||| || ||||||||| |||| | || || || ||| Sbjct 1025 TCGTCATCGGTTGAAATAACCCCCGCCTTCTGATATTCAGAAACTTTCTTCTCGAAAAAG 966 Query 13614 TTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661 ||||| || ||||| | || ||||| |||||||||||||| |||||| Sbjct 965 TTAGTCTTCCCTTCAATAGAAATATTCTCCATAAAATCAAAAGGATTT 918 >seq13787 Length=5932 Score = 138 bits (152), Expect = 1e-27 Identities = 183/254 (72%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 13863 AAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAA 13922 |||| || ||| |||||||| | |||||| || ||||||| | ||| | ||| || Sbjct 749 AAAAGTAGACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTT 808 Query 13923 AATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCG 13982 ||| | ||| ||||| | || ||||| |||| |||||| ||||||||||| || Sbjct 809 TGTGTCAGTCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCA 868 Query 13983 GAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTT 14042 || |||||||| |||||||| || ||||| || || | ||||| ||||| || |||| | Sbjct 869 GAGAAGAATATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCT 928 Query 14043 TTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCA 14102 || | | |||| |||||| |||| |||||| || |||||||| | | Sbjct 929 TTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAATTCGAAT 988 Query 14103 ATAGCATTAAATAA 14116 |||||||||||||| Sbjct 989 ATAGCATTAAATAA 1002 >seq27347 Length=2531 Score = 129 bits (142), Expect = 6e-25 Identities = 142/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 13856 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13915 ||||| |||| |||||| |||||||| | |||||| || ||||| | | ||| | ||| Sbjct 214 ATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTC 155 Query 13916 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975 || ||| | ||| ||||| || || ||||| |||| |||||| ||||||||||| Sbjct 154 ATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAA 95 Query 13976 TGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGA 14035 || || |||||||| ||||||||||| ||||| || || | ||||| ||||| || Sbjct 94 ACTTCCAGAGAAGAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCAAATGA 35 Query 14036 TGCTTTTTT 14044 |||| ||| Sbjct 34 AGCTTCTTT 26 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 |||||||| ||| || ||||||||| |||| | || || || |||||||| || ||| Sbjct 835 GAAATAACCCCCGCCTTCTGATATTCAGAAACTTTCTTCTCGAAAAAGTTAGTCTTCCCT 776 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661 || | || ||||| |||||||||||||| |||||| Sbjct 775 TCAATAGAAATATTCTCCATAAAATCAAAAGGATTT 740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479540060559400