Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq2786 158 1e-33 seq3049 149 6e-31 seq27688 147 2e-30 seq27347 134 1e-26 >seq2786 Length=16508 Score = 158 bits (174), Expect = 1e-33 Identities = 232/327 (71%), Gaps = 6/327 (2%) Strand=Plus/Plus Query 13554 AGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTT 13613 ||||| || |||| |||| | ||||| ||| |||||||| || || || Sbjct 4075 AGGAAATAAATTA-TTAA-----CCTTTTCAATATCAACAGCCTCTCGAATTATTTCCTC 4128 Query 13614 AATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACA 13673 |||| |||||| || || || | ||||| |||| |||||| |||||||| | Sbjct 4129 AATACGTTCATTATTTGGTTTATTATTCAAATGTTGGAAAAGTAAACAAGCAAAATCTCG 4188 Query 13674 ATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCC 13733 |||||| || ||||||| | ||| | ||| || ||| | ||| ||||| || || Sbjct 4189 ATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGTGTCAGTCCAGGCATAAAACC 4248 Query 13734 TCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGC 13793 ||||| |||| |||||| |||||||| || ||| ||||||||||| ||||||||||| Sbjct 4249 GCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAAAAGAATATACCCTCAACTGC 4308 Query 13794 AGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGC 13853 ||||| || || || ||||| ||||| || |||| ||| | | |||| ||| Sbjct 4309 TGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCTTTACTAGCAGTCCAACGAAGAGC 4368 Query 13854 CCATTCAGAtttttttttAATAAAATC 13880 ||| |||| |||||| || |||||||| Sbjct 4369 CCAATCAGCTTTTTTCTTGATAAAATC 4395 >seq3049 Length=15854 Score = 149 bits (164), Expect = 6e-31 Identities = 175/237 (74%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 13644 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13703 ||||| |||| |||||| |||||||| | |||||| || ||||| | | ||| | ||| Sbjct 13765 ATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTC 13824 Query 13704 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAA 13763 || ||| | ||| ||||| || || ||||| |||| |||||| |||||||| || Sbjct 13825 ATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAA 13884 Query 13764 TGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGA 13823 ||| || |||||||| ||||||||||| ||||| || || || ||||| ||||| || Sbjct 13885 ACTTCCAGAGAAGAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCAAATGA 13944 Query 13824 TGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATC 13880 |||| ||| | | |||| |||||| |||| |||||| || |||||||| Sbjct 13945 AGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATC 14001 >seq27688 Length=2484 Score = 147 bits (162), Expect = 2e-30 Identities = 176/238 (74%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 13644 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13703 ||||| |||| |||||| |||||||| | |||||| || ||||| | | ||| | ||| Sbjct 389 ATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTC 330 Query 13704 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAA 13763 || ||| | ||| ||||| || || ||||| |||| |||||| |||||||| || Sbjct 329 ATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAA 270 Query 13764 TGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGA 13823 ||| || |||||||| ||||||||||| ||||| || || || ||||| ||||| || Sbjct 269 ACTTCCAGAGAAGAATATACCCTCAACTGCGGCAAAAGCAATGAGACGTTCACCAAATGA 210 Query 13824 TGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttt-tttAATAAAATC 13880 |||| ||| | | |||| |||||| |||| |||||| ||| |||||||| Sbjct 209 AGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTTGATAAAATC 152 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 13342 TCGTCTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAG 13401 ||||| | | | |||||||| ||| || ||||||||| |||| | || || |||||| Sbjct 1025 TCGTCATCGGTTGAAATAACCCCCGCCTTCTGATATTCAGAAACTTTCTTCTCGAAAAAG 966 Query 13402 TTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAATGGATTT 13449 ||||| || ||||| | || ||||| ||||||||||| || |||||| Sbjct 965 TTAGTCTTCCCTTCAATAGAAATATTCTCCATAAAATCAAAAGGATTT 918 >seq27347 Length=2531 Score = 134 bits (148), Expect = 1e-26 Identities = 143/189 (76%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 13644 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13703 ||||| |||| |||||| |||||||| | |||||| || ||||| | | ||| | ||| Sbjct 214 ATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTC 155 Query 13704 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAA 13763 || ||| | ||| ||||| || || ||||| |||| |||||| |||||||| || Sbjct 154 ATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAA 95 Query 13764 TGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGA 13823 ||| || |||||||| ||||||||||| ||||| || || || ||||| ||||| || Sbjct 94 ACTTCCAGAGAAGAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCAAATGA 35 Query 13824 TGCTTTTTT 13832 |||| ||| Sbjct 34 AGCTTCTTT 26 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 |||||||| ||| || ||||||||| |||| | || || ||||||||||| || ||| Sbjct 835 GAAATAACCCCCGCCTTCTGATATTCAGAAACTTTCTTCTCGAAAAAGTTAGTCTTCCCT 776 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTT 13449 || | || ||||| ||||||||||| || |||||| Sbjct 775 TCAATAGAAATATTCTCCATAAAATCAAAAGGATTT 740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478401306855240