Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29]
31,341 sequences; 235,798,407 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq2786 158 1e-33
seq3049 149 6e-31
seq27688 147 2e-30
seq27347 134 1e-26
>seq2786
Length=16508
Score = 158 bits (174), Expect = 1e-33
Identities = 232/327 (71%), Gaps = 6/327 (2%)
Strand=Plus/Plus
Query 13554 AGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTT 13613
||||| || |||| |||| | ||||| ||| |||||||| || || ||
Sbjct 4075 AGGAAATAAATTA-TTAA-----CCTTTTCAATATCAACAGCCTCTCGAATTATTTCCTC 4128
Query 13614 AATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACA 13673
|||| |||||| || || || | ||||| |||| |||||| |||||||| |
Sbjct 4129 AATACGTTCATTATTTGGTTTATTATTCAAATGTTGGAAAAGTAAACAAGCAAAATCTCG 4188
Query 13674 ATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCC 13733
|||||| || ||||||| | ||| | ||| || ||| | ||| ||||| || ||
Sbjct 4189 ATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGTGTCAGTCCAGGCATAAAACC 4248
Query 13734 TCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGC 13793
||||| |||| |||||| |||||||| || ||| ||||||||||| |||||||||||
Sbjct 4249 GCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAAAAGAATATACCCTCAACTGC 4308
Query 13794 AGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGC 13853
||||| || || || ||||| ||||| || |||| ||| | | |||| |||
Sbjct 4309 TGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCTTTACTAGCAGTCCAACGAAGAGC 4368
Query 13854 CCATTCAGAtttttttttAATAAAATC 13880
||| |||| |||||| || ||||||||
Sbjct 4369 CCAATCAGCTTTTTTCTTGATAAAATC 4395
>seq3049
Length=15854
Score = 149 bits (164), Expect = 6e-31
Identities = 175/237 (74%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 13644 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13703
||||| |||| |||||| |||||||| | |||||| || ||||| | | ||| | |||
Sbjct 13765 ATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTC 13824
Query 13704 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAA 13763
|| ||| | ||| ||||| || || ||||| |||| |||||| |||||||| ||
Sbjct 13825 ATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAA 13884
Query 13764 TGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGA 13823
||| || |||||||| ||||||||||| ||||| || || || ||||| ||||| ||
Sbjct 13885 ACTTCCAGAGAAGAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCAAATGA 13944
Query 13824 TGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATC 13880
|||| ||| | | |||| |||||| |||| |||||| || ||||||||
Sbjct 13945 AGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATC 14001
>seq27688
Length=2484
Score = 147 bits (162), Expect = 2e-30
Identities = 176/238 (74%), Gaps = 1/238 (0%)
Strand=Plus/Minus
Query 13644 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13703
||||| |||| |||||| |||||||| | |||||| || ||||| | | ||| | |||
Sbjct 389 ATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTC 330
Query 13704 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAA 13763
|| ||| | ||| ||||| || || ||||| |||| |||||| |||||||| ||
Sbjct 329 ATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAA 270
Query 13764 TGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGA 13823
||| || |||||||| ||||||||||| ||||| || || || ||||| ||||| ||
Sbjct 269 ACTTCCAGAGAAGAATATACCCTCAACTGCGGCAAAAGCAATGAGACGTTCACCAAATGA 210
Query 13824 TGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttt-tttAATAAAATC 13880
|||| ||| | | |||| |||||| |||| |||||| ||| ||||||||
Sbjct 209 AGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTTGATAAAATC 152
Score = 87.8 bits (96), Expect = 2e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 13342 TCGTCTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAG 13401
||||| | | | |||||||| ||| || ||||||||| |||| | || || ||||||
Sbjct 1025 TCGTCATCGGTTGAAATAACCCCCGCCTTCTGATATTCAGAAACTTTCTTCTCGAAAAAG 966
Query 13402 TTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAATGGATTT 13449
||||| || ||||| | || ||||| ||||||||||| || ||||||
Sbjct 965 TTAGTCTTCCCTTCAATAGAAATATTCTCCATAAAATCAAAAGGATTT 918
>seq27347
Length=2531
Score = 134 bits (148), Expect = 1e-26
Identities = 143/189 (76%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 13644 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13703
||||| |||| |||||| |||||||| | |||||| || ||||| | | ||| | |||
Sbjct 214 ATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTC 155
Query 13704 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAA 13763
|| ||| | ||| ||||| || || ||||| |||| |||||| |||||||| ||
Sbjct 154 ATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAA 95
Query 13764 TGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGA 13823
||| || |||||||| ||||||||||| ||||| || || || ||||| ||||| ||
Sbjct 94 ACTTCCAGAGAAGAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCAAATGA 35
Query 13824 TGCTTTTTT 13832
|||| |||
Sbjct 34 AGCTTCTTT 26
Score = 84.2 bits (92), Expect = 2e-11
Identities = 76/96 (79%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413
|||||||| ||| || ||||||||| |||| | || || ||||||||||| || |||
Sbjct 835 GAAATAACCCCCGCCTTCTGATATTCAGAAACTTTCTTCTCGAAAAAGTTAGTCTTCCCT 776
Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTT 13449
|| | || ||||| ||||||||||| || ||||||
Sbjct 775 TCAATAGAAATATTCTCCATAAAATCAAAAGGATTT 740
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478401306855240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |