Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29]
31,341 sequences; 235,798,407 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq490 113 6e-20
seq1624 111 2e-19
seq16867 107 3e-18
seq30683 98.7 1e-15
seq2786 89.7 7e-13
seq13787 84.2 3e-11
>seq490
Length=29575
Score = 113 bits (124), Expect = 6e-20
Identities = 215/315 (68%), Gaps = 4/315 (1%)
Strand=Plus/Plus
Query 72172 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 72231
|| |||||||||||||| || || | || |||| ||||| |||||||||||||
Sbjct 6648 TTATTTCCTCCCTGATCAATATAGCGTGCCACAGAATTAAAAACTTGCAACATTGGAATA 6707
Query 72232 ATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGC 72289
|| ||||| || ||||| || || ||||| | || |||||||| | ||
Sbjct 6708 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATG- 6766
Query 72290 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 72349
|||||| || || ||||| || ||| ||| ||||| | || || || |||| || |
Sbjct 6767 -AATTGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTTT 6825
Query 72350 CATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGT 72409
|| | || || || || ||| | | ||| ||| | |||||| ||| | |||
Sbjct 6826 CAAAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTG 6885
Query 72410 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA 72469
|||| | || ||||| || ||||| || ||||| ||||| |||||||| || ||
Sbjct 6886 GACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCAACGCTCGCCCA 6945
Query 72470 GTAGATTGTACGTCT 72484
|||||||| ||||
Sbjct 6946 TGAGATTGTAAGTCT 6960
Score = 113 bits (124), Expect = 6e-20
Identities = 118/154 (77%), Gaps = 1/154 (1%)
Strand=Plus/Plus
Query 72764 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGG 72823
|||| | ||||| ||||| ||||| |||||||| || || |||||||| || || | |
Sbjct 7966 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 8025
Query 72824 CATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATT 72883
|||||||||| || ||||||| | || |||| ||| || |||| | | |||||||
Sbjct 8026 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCTACTTCAGCCGCCAAATTATCCAATT 8085
Query 72884 CTACCGTTGTTACTCCATTATATATTCCT-TGGA 72916
| || |||||||||||| |||| || ||| ||||
Sbjct 8086 CAACAGTTGTTACTCCAGTATAAATGCCTCTGGA 8119
Score = 102 bits (112), Expect = 1e-16
Identities = 114/150 (76%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 72511 TGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTT 72570
|||||||| || || |||||||| ||||||||||| || || ||||| | || |||
Sbjct 7337 TGTATTCCAACAGCAACACGCATCAACATATGCTGTGGCCTCTCAACTACTTTTCCATTG 7396
Query 72571 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTC 72629
||| ||| | ||| ||| ||| | |||||||| |||||||| | || || ||| ||
Sbjct 7397 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGGAAA-TC 7455
Query 72630 TCGTTCGTAAATAATAACCGAATTGAGTTT 72659
|| || |||||||| || |||||||||||
Sbjct 7456 ACGATCATAAATAATTACTGAATTGAGTTT 7485
>seq1624
Length=20192
Score = 111 bits (122), Expect = 2e-19
Identities = 116/150 (77%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 72511 TGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTT 72570
|||||||| || || |||||||| ||||||||||| || || ||||| | || |||
Sbjct 16535 TGTATTCCAACAGCAACACGCATCAACATATGCTGTGGCCTCTCAACTACTTTTCCATTG 16594
Query 72571 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTC 72629
||| ||| | ||| ||| ||| | |||||||| |||||||| | || |||||| ||
Sbjct 16595 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGAAAA-TC 16653
Query 72630 TCGTTCGTAAATAATAACCGAATTGAGTTT 72659
|| || ||||||||||| |||||||||||
Sbjct 16654 ACGATCATAAATAATAACTGAATTGAGTTT 16683
Score = 107 bits (118), Expect = 3e-18
Identities = 117/154 (76%), Gaps = 1/154 (1%)
Strand=Plus/Plus
Query 72764 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGG 72823
|||| | ||||| || |||||||| |||||||| || || |||||||| || || | |
Sbjct 17458 TAAAAACCTTTTTCGTCTCCTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 17517
Query 72824 CATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATT 72883
||||||| || || ||||||| | || |||| ||| || |||| | | |||||||
Sbjct 17518 CATAATCCGGGTGAACTGTAGTATTTGAAGCAGCTACTTCAGCCGCCAAATTATCCAATT 17577
Query 72884 CTACCGTTGTTACTCCATTATATATTCCT-TGGA 72916
| || |||||||||||| |||| || ||| ||||
Sbjct 17578 CAACAGTTGTTACTCCAGTATAAATGCCTCTGGA 17611
Score = 104 bits (114), Expect = 3e-17
Identities = 213/315 (68%), Gaps = 4/315 (1%)
Strand=Plus/Plus
Query 72172 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 72231
|| |||||||||||||| || || | || |||| ||||| |||||||||||||
Sbjct 16035 TTATTTCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATTGGAATA 16094
Query 72232 ATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGC 72289
|| ||||| || ||||| || || ||||| | || |||||||| | ||
Sbjct 16095 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATG- 16153
Query 72290 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 72349
|| || || || ||||| || ||| ||| ||||| | || || || |||| || |
Sbjct 16154 -GATGGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTTT 16212
Query 72350 CATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGT 72409
|| | || || || || ||| | | ||| ||| | |||||| ||| | |||
Sbjct 16213 CAAAAATTCCTTCAATTGAATCTCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTG 16272
Query 72410 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA 72469
|||| | || ||||| || ||||| || ||||| ||||| |||||||| || ||
Sbjct 16273 GACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCAACGCTCGCCCA 16332
Query 72470 GTAGATTGTACGTCT 72484
|||||||| ||||
Sbjct 16333 TGAGATTGTAAGTCT 16347
>seq16867
Length=4829
Score = 107 bits (118), Expect = 3e-18
Identities = 117/154 (76%), Gaps = 1/154 (1%)
Strand=Plus/Plus
Query 72764 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGG 72823
|||| | ||||| ||||| ||||| |||||||| || || |||||||| || || | |
Sbjct 1898 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 1957
Query 72824 CATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATT 72883
|||||||||| || ||||||| | || || | ||| || |||| | | |||||||
Sbjct 1958 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCCACTTCAGCCGCCAAATTATCCAATT 2017
Query 72884 CTACCGTTGTTACTCCATTATATATTCCT-TGGA 72916
| || |||||||||||| |||| || ||| ||||
Sbjct 2018 CAACAGTTGTTACTCCAGTATAAATGCCTCTGGA 2051
Score = 102 bits (112), Expect = 1e-16
Identities = 114/150 (76%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 72511 TGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTT 72570
|||||||| || || |||||||| ||||||||||| || || ||||| | || |||
Sbjct 970 TGTATTCCAACAGCAACACGCATCAACATATGCTGTGGCCTCTCAACTACTTTTCCATTG 1029
Query 72571 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTC 72629
||| ||| | ||| ||| ||| | |||||||| |||||||| | || || ||| ||
Sbjct 1030 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGGAAA-TC 1088
Query 72630 TCGTTCGTAAATAATAACCGAATTGAGTTT 72659
|| || |||||||| || |||||||||||
Sbjct 1089 ACGATCATAAATAATTACTGAATTGAGTTT 1118
Score = 98.7 bits (108), Expect = 1e-15
Identities = 212/315 (67%), Gaps = 4/315 (1%)
Strand=Plus/Plus
Query 72172 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 72231
|| |||||||||||||| || || | || |||| ||||| |||||||||||||
Sbjct 278 TTATTTCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATTGGAATA 337
Query 72232 ATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGC 72289
|| ||||| || ||||| || || ||||| | || |||||||| | ||
Sbjct 338 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATG- 396
Query 72290 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 72349
||| || || || ||||| || ||| ||| || || | || || || || | || |
Sbjct 397 -AATGGAAAGTCCAATTCCTCCAGCCGATTTTGAAATATAAGCACAACGATTAATTGTTT 455
Query 72350 CATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGT 72409
|| | || || || || ||| | | ||| ||| | |||||| ||| | |||
Sbjct 456 CAAAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTG 515
Query 72410 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA 72469
|||| | || ||||| || ||||| || ||||| ||||| |||||||| || ||
Sbjct 516 GACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCAACGCTCGCCCA 575
Query 72470 GTAGATTGTACGTCT 72484
|||||||| ||||
Sbjct 576 TGAGATTGTAAGTCT 590
>seq30683
Length=2079
Score = 98.7 bits (108), Expect = 1e-15
Identities = 212/315 (67%), Gaps = 4/315 (1%)
Strand=Plus/Minus
Query 72172 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 72231
|| || ||||||||||| || || | || |||| ||||| |||||||||||||
Sbjct 617 TTATTCCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATTGGAATA 558
Query 72232 ATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGC 72289
|| ||||| || ||||| || || ||||| | || |||||||| | ||
Sbjct 557 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATG- 499
Query 72290 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 72349
|| || || || ||||| || ||| ||| ||||| | || || || |||| || |
Sbjct 498 -GATGGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTTT 440
Query 72350 CATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGT 72409
|| | || || || || ||| | | ||| ||| | |||||| ||| | |||
Sbjct 439 CAAAAATTCCTTCAATTGAATCTCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTG 380
Query 72410 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA 72469
|||| | || ||||| || ||||| || ||||| ||||| |||||||| || ||
Sbjct 379 GACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCAACGCTCGCCCA 320
Query 72470 GTAGATTGTACGTCT 72484
|||||||| ||||
Sbjct 319 TGAGATTGTAAGTCT 305
>seq2786
Length=16508
Score = 89.7 bits (98), Expect = 7e-13
Identities = 120/167 (72%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 42047 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAAT 42106
||||||| || | ||||| || ||||| | || || || ||||||| | |||||||
Sbjct 4157 AAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAAT 4216
Query 42107 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA 42166
|| || || ||||| ||||| | || || || || |||||||| || | |||
Sbjct 4217 TCATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCA 4276
Query 42167 AATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAG 42213
|| |||||||||||| || || || ||||| ||||| ||||| ||
Sbjct 4277 AAACTTCCAGAAAAGAATATACCCTCAACTGCTGCAAAAGCAATGAG 4323
Score = 84.2 bits (92), Expect = 3e-11
Identities = 91/121 (75%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384
|||||||| ||| ||||| || || |||||||||||||||||| |||||||| ||
Sbjct 4481 ATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTTTCAATAGC 4540
Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444
|| |||||||| || ||||| | ||||| | | || |||||| | ||| |||||
Sbjct 4541 AATTTGAAATCCATAAAAACAACGAGCCTCTGGTATTTGAACTTCTTGAGCAAAACGTTC 4600
Query 42445 A 42445
|
Sbjct 4601 A 4601
>seq13787
Length=5932
Score = 84.2 bits (92), Expect = 3e-11
Identities = 91/121 (75%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384
|||||||| ||| ||||| || || |||||||||||||||||| |||||||| ||
Sbjct 1065 ATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTTTCAATAGC 1124
Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444
|| |||||||| || ||||| | ||||| | | || |||||| | ||| |||||
Sbjct 1125 AATTTGAAATCCATAAAAACAACGAGCCTCTGGTATTTGAACTTCTTGAGCAAAACGTTC 1184
Query 42445 A 42445
|
Sbjct 1185 A 1185
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 670876272829160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |