Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq2786 105 6e-18 seq13787 104 2e-17 seq3049 98.7 9e-16 >seq2786 Length=16508 Score = 105 bits (116), Expect = 6e-18 Identities = 327/503 (65%), Gaps = 46/503 (9%) Strand=Plus/Plus Query 13070 TTTTCTATATCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAAT-GGAGGATT 13128 ||||| |||||||| || || || ||| || || | ||||||| || | || ||| Sbjct 4094 TTTTCAATATCAACAGCCTCTCGAATTATTTC-CTCAATACGTTCATTATTTGGTTTATT 4152 Query 13129 TGATAGATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTAT 13188 | ||| | || | | ||| |||||||| | || | ||||||||||| | || Sbjct 4153 ATTCAAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAAT 4212 Query 13189 TAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGC 13248 || || || ||| || || ||||||| || ||||| || | |||||| || || Sbjct 4213 TAATTCATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGC 4272 Query 13249 AGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACC 13308 |||||| || ||||| ||||| || |||||||||||||| || || | | |||||| Sbjct 4273 AGCAAAACTTCCAGAAAAGAATATACCCTCAACTGCTGCAAAAGCAATGAGACGTTCACC 4332 Query 13309 ATACGTACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTT-----A 13363 | | | | | |||||| | |||| ||||| | ||||||| || | Sbjct 4333 AAATGAAGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAA 4392 Query 13364 ACGCAGTTC----ATA---TTTTCTA---TTGCG---TTAAATAAA--TAAtttttttCC 13408 | | ||| ||| || || ||| ||||| ||| | |||||||| Sbjct 4393 ATCAAATTCGAATATAGCATTAAATAACTTTGAACTATTAAAAAAAATTTATTTTTTTAA 4452 Query 13409 T-------------TACTGTCTAA----------AATATAAGTATCTATCAATAAGCTAT 13445 | ||| || || |||||||||||| || ||| || Sbjct 4453 TCTAAAAAAGGAAATACCGTTCAATTGGATCTTTAATATAAGTATCAATTAATTTTGAAT 4512 Query 13446 ACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTG 13505 |||||||||||||||||||||| || || ||||| || ||||||||||| | |||||||| Sbjct 4513 ACATTTCTGAATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCCTCTG 4572 Query 13506 ATACCTGAACTTC-GGAGTAAAA 13527 || |||||||| ||| |||| Sbjct 4573 GTATTTGAACTTCTTGAGCAAAA 4595 >seq13787 Length=5932 Score = 104 bits (114), Expect = 2e-17 Identities = 89/109 (82%), Gaps = 1/109 (1%) Strand=Plus/Plus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 |||||||||||| || ||| |||||||||||||||||||||||| || || ||||| Sbjct 1071 AATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTTTCAATAGCAATTTG 1130 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC-GGAGTAAAA 13527 || ||||||||||| | |||||||| || |||||||| ||| |||| Sbjct 1131 AAATCCATAAAAACAACGAGCCTCTGGTATTTGAACTTCTTGAGCAAAA 1179 >seq3049 Length=15854 Score = 98.7 bits (108), Expect = 9e-16 Identities = 88/109 (81%), Gaps = 1/109 (1%) Strand=Plus/Plus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 |||||||||||| || ||| |||||||||||||||||||||||| || || ||||| Sbjct 14087 AATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTTTCAATAGCAATTTG 14146 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC-GGAGTAAAA 13527 || ||||||||||| | ||| |||| || |||||||| ||| |||| Sbjct 14147 AAATCCATAAAAACAACGAGCTTCTGGTATTTGAACTTCTTGAGCAAAA 14195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430817778326082