Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_005260.1 Length=233234 Score E Sequences producing significant alignments: (Bits) Value seq21345 84.2 3e-11 seq13706 84.2 3e-11 seq7703 84.2 3e-11 seq6354 84.2 3e-11 seq3229 84.2 3e-11 seq3033 84.2 3e-11 >seq21345 Length=3639 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 108015 GCCCCCACTCGGGATTGAACCGAGGACCTACTGCTTACAAGGCAGTTGCTCTACCACTGA 108074 |||||||| ||||||||||||| |||||| | | |||| || | | ||||||||||||| Sbjct 3143 GCCCCCACGCGGGATTGAACCGCGGACCTTCAGTTTACGAGACTGACGCTCTACCACTGA 3202 Query 108075 GCTATAGAGGC 108085 ||||||||||| Sbjct 3203 GCTATAGAGGC 3213 >seq13706 Length=5965 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 108015 GCCCCCACTCGGGATTGAACCGAGGACCTACTGCTTACAAGGCAGTTGCTCTACCACTGA 108074 |||||||| ||||||||||||| |||||| | | |||| || | | ||||||||||||| Sbjct 5517 GCCCCCACGCGGGATTGAACCGCGGACCTTCAGTTTACGAGACTGACGCTCTACCACTGA 5576 Query 108075 GCTATAGAGGC 108085 ||||||||||| Sbjct 5577 GCTATAGAGGC 5587 >seq7703 Length=9506 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 108015 GCCCCCACTCGGGATTGAACCGAGGACCTACTGCTTACAAGGCAGTTGCTCTACCACTGA 108074 |||||||| ||||||||||||| |||||| | | |||| || | | ||||||||||||| Sbjct 3981 GCCCCCACGCGGGATTGAACCGCGGACCTTCAGTTTACGAGACTGACGCTCTACCACTGA 4040 Query 108075 GCTATAGAGGC 108085 ||||||||||| Sbjct 4041 GCTATAGAGGC 4051 >seq6354 Length=10790 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 108015 GCCCCCACTCGGGATTGAACCGAGGACCTACTGCTTACAAGGCAGTTGCTCTACCACTGA 108074 |||||||| ||||||||||||| |||||| | | |||| || | | ||||||||||||| Sbjct 10652 GCCCCCACGCGGGATTGAACCGCGGACCTTCAGTTTACGAGACTGACGCTCTACCACTGA 10593 Query 108075 GCTATAGAGGC 108085 ||||||||||| Sbjct 10592 GCTATAGAGGC 10582 >seq3229 Length=15431 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 108015 GCCCCCACTCGGGATTGAACCGAGGACCTACTGCTTACAAGGCAGTTGCTCTACCACTGA 108074 |||||||| ||||||||||||| |||||| | | |||| || | | ||||||||||||| Sbjct 7628 GCCCCCACGCGGGATTGAACCGCGGACCTTCAGTTTACGAGACTGACGCTCTACCACTGA 7687 Query 108075 GCTATAGAGGC 108085 ||||||||||| Sbjct 7688 GCTATAGAGGC 7698 >seq3033 Length=15889 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 108015 GCCCCCACTCGGGATTGAACCGAGGACCTACTGCTTACAAGGCAGTTGCTCTACCACTGA 108074 |||||||| ||||||||||||| |||||| | | |||| || | | ||||||||||||| Sbjct 7150 GCCCCCACGCGGGATTGAACCGCGGACCTTCAGTTTACGAGACTGACGCTCTACCACTGA 7091 Query 108075 GCTATAGAGGC 108085 ||||||||||| Sbjct 7090 GCTATAGAGGC 7080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745928458673840