Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq15966 105 2e-17 seq9420 105 2e-17 seq1871 105 2e-17 seq5142 104 5e-17 seq2634 104 5e-17 seq567 102 2e-16 seq695 98.7 2e-15 seq5333 91.5 3e-13 seq3049 89.7 1e-12 seq8275 87.8 4e-12 seq13787 86.0 1e-11 seq2786 86.0 1e-11 >seq15966 Length=5121 Score = 105 bits (116), Expect = 2e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496 |||||||||||| || || || |||||||| ||||| ||||| || ||||| || | ||| Sbjct 927 CTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGT 868 Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556 ||| || || ||||| || |||||||| || || || || || |||||||| ||||| Sbjct 867 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 808 Query 104557 CATTTT 104562 ||| || Sbjct 807 CATATT 802 >seq9420 Length=8200 Score = 105 bits (116), Expect = 2e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496 |||||||||||| || || || |||||||| ||||| ||||| || ||||| || | ||| Sbjct 7158 CTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGT 7217 Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556 ||| || || ||||| || |||||||| || || || || || |||||||| ||||| Sbjct 7218 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 7277 Query 104557 CATTTT 104562 ||| || Sbjct 7278 CATATT 7283 >seq1871 Length=19151 Score = 105 bits (116), Expect = 2e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496 |||||||||||| || || || |||||||| ||||| ||||| || ||||| || | ||| Sbjct 11590 CTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAATGGT 11531 Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556 ||| || || ||||| || |||||||| || || || || || |||||||| ||||| Sbjct 11530 ATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAATCTG 11471 Query 104557 CATTTT 104562 ||| || Sbjct 11470 CATATT 11465 >seq5142 Length=12213 Score = 104 bits (114), Expect = 5e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTA 104497 || ||||||||||| ||||||||||| ||||||||||| || || || ||||| | |||| Sbjct 6909 TGCTGATCAGGAGGGATTCCTTCTTTGTCCTGAATCTTGGCCTTGACGTTTTCAATGGTA 6968 Query 104498 TCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557 || || ||| || ||||| || || ||||| || || || || || ||||| ||||| Sbjct 6969 TCAGAAGCTTCCACTTCTAGAGTGATTGTCTTTCCCGTGAGGGTCTTCACAAAGGTCTGC 7028 Query 104558 AT 104559 || Sbjct 7029 AT 7030 Score = 104 bits (114), Expect = 5e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTA 104497 || ||||||||||| |||||||| ||||| |||||||| || || || ||||| | || Sbjct 7177 TGCTGATCAGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCGATAGTG 7236 Query 104498 TCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557 || || ||| || || ||||| || ||||| |||||||| || || ||||| |||||| Sbjct 7237 TCAGAAGCTTCAACTTCGAGTGTGATGGTCTTTCCAGTAAGAGTCTTAACAAAAATCTGC 7296 Query 104558 AT 104559 || Sbjct 7297 AT 7298 Score = 95.1 bits (104), Expect = 3e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496 ||| ||||||||||| || ||||| || || ||||| ||||| || |||||||| | ||| Sbjct 7447 CTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCGATGGT 7506 Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556 ||| || || || || || || || || || |||||||| || || || || ||||| Sbjct 7507 ATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAGATCTG 7566 Query 104557 CATTTTG 104563 ||| ||| Sbjct 7567 CATATTG 7573 >seq2634 Length=16880 Score = 104 bits (114), Expect = 5e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTA 104497 || ||||||||||| |||||||| ||||| |||||||| || || || ||||| | || Sbjct 1637 TGCTGATCAGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCGATAGTG 1696 Query 104498 TCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557 || || ||| || || ||||| || ||||| |||||||| || || ||||| |||||| Sbjct 1697 TCAGAAGCTTCAACTTCGAGTGTGATGGTCTTTCCAGTAAGAGTCTTAACAAAAATCTGC 1756 Query 104558 AT 104559 || Sbjct 1757 AT 1758 Score = 98.7 bits (108), Expect = 2e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTA 104497 || ||||||||||| ||||||||||| ||||||||||| || || || || || | |||| Sbjct 1369 TGCTGATCAGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCCTTGACGTTCTCAATGGTA 1428 Query 104498 TCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557 || | ||| || ||||| || || ||||| || || || || || ||||| |||||| Sbjct 1429 TCAGACGCTTCCACTTCTAGAGTGATTGTCTTTCCCGTGAGGGTCTTCACAAAGATCTGC 1488 Query 104558 AT 104559 || Sbjct 1489 AT 1490 Score = 95.1 bits (104), Expect = 3e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496 ||| ||||||||||| || ||||| || || ||||| ||||| || |||||||| | ||| Sbjct 1907 CTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCGATGGT 1966 Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556 ||| || || || || || || || || || |||||||| || || || || ||||| Sbjct 1967 ATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAGATCTG 2026 Query 104557 CATTTTG 104563 ||| ||| Sbjct 2027 CATATTG 2033 >seq567 Length=28520 Score = 102 bits (112), Expect = 2e-16 Identities = 99/125 (79%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496 ||| |||||||| || || || || || ||||||||||| ||||| ||||| || | || Sbjct 6915 CTGCTGATCAGGTGGAATACCCTCCTTGTCCTGAATCTTAGCTTTCACATTCTCAATAGT 6856 Query 104497 ATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCT 104555 ||| | ||| ||| || || || ||||||||||| || |||||||| || ||||| || | Sbjct 6855 ATC-CGAGGCTTCCACTTCCAGAGTAATAGTCTTTCCCGTAAGTGTCTTAACAAAAATTT 6797 Query 104556 GCATT 104560 ||||| Sbjct 6796 GCATT 6792 >seq695 Length=26773 Score = 98.7 bits (108), Expect = 2e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496 ||| ||||||||||| || ||||| || || ||||| ||||| || |||||||| | ||| Sbjct 12179 CTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCGATGGT 12120 Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556 ||| || || || || || || || || || |||||||| || ||||| || ||||| Sbjct 12119 ATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTTACGAAGATCTG 12060 Query 104557 CATTTTG 104563 ||| ||| Sbjct 12059 CATATTG 12053 Score = 98.7 bits (108), Expect = 2e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTA 104497 || ||||||||||| ||||||||||| ||||||||||| || || || || || | |||| Sbjct 12720 TGCTGATCAGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCCTTGACGTTCTCAATGGTA 12661 Query 104498 TCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557 || | ||| || ||||| || || ||||| || || || || || ||||| |||||| Sbjct 12660 TCAGACGCTTCCACTTCTAGGGTGATTGTCTTTCCCGTGAGGGTCTTCACAAAGATCTGC 12601 Query 104558 AT 104559 || Sbjct 12600 AT 12599 >seq5333 Length=11984 Score = 91.5 bits (100), Expect = 3e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496 ||||||||| || || || || || ||||| |||||||| || || |||||||| | || Sbjct 8168 CTGTTGATCCGGCGGAATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTTTCAATCGT 8109 Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556 ||| | || || || || ||||||||||| ||||| | ||||| ||||| ||||| Sbjct 8108 GTCGGATGCCTCAACTTCAAGCGTAATAGTCTTTCCAGTTAAAGTTTTGACAAAAATCTG 8049 Query 104557 CAT 104559 ||| Sbjct 8048 CAT 8046 >seq3049 Length=15854 Score = 89.7 bits (98), Expect = 1e-12 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 268915 TCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAA 268974 |||||| || || || || ||||| | |||||||| ||||| || || ||||| ||||| Sbjct 14189 TCAAGAAGTTCAAATACCAGAAGCTCGTTGTTTTTATGGATTTCAAATTGCTATTGAAAA 14130 Query 268975 TATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 |||||||||||| ||||| |||||| ||||||||||| Sbjct 14129 TATTCATTCAGAAATGTATTCAAAATTAATTGATACTTATAT 14088 >seq8275 Length=9039 Score = 87.8 bits (96), Expect = 4e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496 ||||||||| || || || || || ||||| |||||||| || || |||||||| | || Sbjct 4088 CTGTTGATCCGGTGGAATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTTTCAATCGT 4029 Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556 ||| | || || || || ||||||||||| || || | ||||| ||||| ||||| Sbjct 4028 GTCGGATGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTTAAAGTTTTGACAAAAATCTG 3969 Query 104557 CAT 104559 ||| Sbjct 3968 CAT 3966 >seq13787 Length=5932 Score = 86.0 bits (94), Expect = 1e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 268915 TCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAA 268974 |||||| || || || || || || | |||||||| ||||| || || ||||| ||||| Sbjct 1173 TCAAGAAGTTCAAATACCAGAGGCTCGTTGTTTTTATGGATTTCAAATTGCTATTGAAAA 1114 Query 268975 TATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 |||||||||||| ||||| |||||| ||||||||||| Sbjct 1113 TATTCATTCAGAAATGTATTCAAAATTAATTGATACTTATAT 1072 >seq2786 Length=16508 Score = 86.0 bits (94), Expect = 1e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 268915 TCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAA 268974 |||||| || || || || || || | |||||||| ||||| || || ||||| ||||| Sbjct 4589 TCAAGAAGTTCAAATACCAGAGGCTCGTTGTTTTTATGGATTTCAAATTGCTATTGAAAA 4530 Query 268975 TATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 |||||||||||| ||||| |||||| ||||||||||| Sbjct 4529 TATTCATTCAGAAATGTATTCAAAATTAATTGATACTTATAT 4488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150936048416428