Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29]
31,341 sequences; 235,798,407 total letters
Query= NC_005902.1
Length=186250
Score E
Sequences producing significant alignments: (Bits) Value
seq31166 86.0 7e-12
seq5035 82.4 9e-11
seq60 82.4 9e-11
>seq31166
Length=2021
Score = 86.0 bits (94), Expect = 7e-12
Identities = 110/149 (74%), Gaps = 2/149 (1%)
Strand=Plus/Minus
Query 6810 TTGTTCTTTTATAGCTTTTATATGATCTA-AATAAATATGAGCATCTCCTAGCGTATGAA 6868
|||| ||||| ||||| || ||| | || |||||||||||||||| || || |||||||
Sbjct 1005 TTGTGTTTTTAAAGCTTCTAAATG-TGTAGAATAAATATGAGCATCACCAAGTGTATGAA 947
Query 6869 TAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAG 6928
|||||||||| | ||| | | | ||||| || | || || | ||||| ||||
Sbjct 946 TAAATTCACCCGCTTTAAGTCCTGTTACATGAGCGATCATATGAGTAAGTAATGAATAAC 887
Query 6929 AAGCTACATTAAAAGGTACACCTAATCCC 6957
|||| ||| ||||| || ||||| |||
Sbjct 886 TGGCTATATTGAAAGGAACGCCTAAACCC 858
>seq5035
Length=12327
Score = 82.4 bits (90), Expect = 9e-11
Identities = 109/149 (73%), Gaps = 2/149 (1%)
Strand=Plus/Plus
Query 6810 TTGTTCTTTTATAGCTTTTATATGATCTA-AATAAATATGAGCATCTCCTAGCGTATGAA 6868
|||| ||||| ||||| || ||| | || |||||||||| ||||| || || |||||||
Sbjct 8319 TTGTGTTTTTAAAGCTTCTAAATG-TGTAGAATAAATATGTGCATCACCAAGTGTATGAA 8377
Query 6869 TAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAG 6928
|||||||||| | ||| | | | ||||| || | || || | ||||| ||||
Sbjct 8378 TAAATTCACCCGCTTTAAGTCCTGTTACATGAGCGATCATATGAGTAAGTAATGAATAAC 8437
Query 6929 AAGCTACATTAAAAGGTACACCTAATCCC 6957
|||| ||| ||||| || ||||| |||
Sbjct 8438 TGGCTATATTGAAAGGAACGCCTAAACCC 8466
>seq60
Length=47019
Score = 82.4 bits (90), Expect = 9e-11
Identities = 109/149 (73%), Gaps = 2/149 (1%)
Strand=Plus/Plus
Query 6810 TTGTTCTTTTATAGCTTTTATATGATCTA-AATAAATATGAGCATCTCCTAGCGTATGAA 6868
|||| ||||| ||| | || ||| | || |||||||||||||||| || || |||||||
Sbjct 12178 TTGTGTTTTTAAAGCCTCTAAATG-TGTAGAATAAATATGAGCATCACCAAGTGTATGAA 12236
Query 6869 TAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAG 6928
|||||||||| | ||| | | | ||||| || | || || | ||||| ||||
Sbjct 12237 TAAATTCACCCGCTTTAAGTCCTGTTACATGAGCGATCATATGAGTAAGTAATGAATAAC 12296
Query 6929 AAGCTACATTAAAAGGTACACCTAATCCC 6957
|||| ||| ||||| || ||||| |||
Sbjct 12297 TGGCTATATTGAAAGGAACGCCTAAACCC 12325
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595638559695600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |