Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq31166 86.0 7e-12 seq5035 82.4 9e-11 seq60 82.4 9e-11 >seq31166 Length=2021 Score = 86.0 bits (94), Expect = 7e-12 Identities = 110/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 6810 TTGTTCTTTTATAGCTTTTATATGATCTA-AATAAATATGAGCATCTCCTAGCGTATGAA 6868 |||| ||||| ||||| || ||| | || |||||||||||||||| || || ||||||| Sbjct 1005 TTGTGTTTTTAAAGCTTCTAAATG-TGTAGAATAAATATGAGCATCACCAAGTGTATGAA 947 Query 6869 TAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAG 6928 |||||||||| | ||| | | | ||||| || | || || | ||||| |||| Sbjct 946 TAAATTCACCCGCTTTAAGTCCTGTTACATGAGCGATCATATGAGTAAGTAATGAATAAC 887 Query 6929 AAGCTACATTAAAAGGTACACCTAATCCC 6957 |||| ||| ||||| || ||||| ||| Sbjct 886 TGGCTATATTGAAAGGAACGCCTAAACCC 858 >seq5035 Length=12327 Score = 82.4 bits (90), Expect = 9e-11 Identities = 109/149 (73%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 6810 TTGTTCTTTTATAGCTTTTATATGATCTA-AATAAATATGAGCATCTCCTAGCGTATGAA 6868 |||| ||||| ||||| || ||| | || |||||||||| ||||| || || ||||||| Sbjct 8319 TTGTGTTTTTAAAGCTTCTAAATG-TGTAGAATAAATATGTGCATCACCAAGTGTATGAA 8377 Query 6869 TAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAG 6928 |||||||||| | ||| | | | ||||| || | || || | ||||| |||| Sbjct 8378 TAAATTCACCCGCTTTAAGTCCTGTTACATGAGCGATCATATGAGTAAGTAATGAATAAC 8437 Query 6929 AAGCTACATTAAAAGGTACACCTAATCCC 6957 |||| ||| ||||| || ||||| ||| Sbjct 8438 TGGCTATATTGAAAGGAACGCCTAAACCC 8466 >seq60 Length=47019 Score = 82.4 bits (90), Expect = 9e-11 Identities = 109/149 (73%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 6810 TTGTTCTTTTATAGCTTTTATATGATCTA-AATAAATATGAGCATCTCCTAGCGTATGAA 6868 |||| ||||| ||| | || ||| | || |||||||||||||||| || || ||||||| Sbjct 12178 TTGTGTTTTTAAAGCCTCTAAATG-TGTAGAATAAATATGAGCATCACCAAGTGTATGAA 12236 Query 6869 TAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAG 6928 |||||||||| | ||| | | | ||||| || | || || | ||||| |||| Sbjct 12237 TAAATTCACCCGCTTTAAGTCCTGTTACATGAGCGATCATATGAGTAAGTAATGAATAAC 12296 Query 6929 AAGCTACATTAAAAGGTACACCTAATCCC 6957 |||| ||| ||||| || ||||| ||| Sbjct 12297 TGGCTATATTGAAAGGAACGCCTAAACCC 12325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595638559695600