Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq5142 109 5e-19 seq2634 109 5e-19 seq695 105 6e-18 seq5365 89.7 5e-13 seq567 89.7 5e-13 seq16244 86.0 6e-12 seq6254 86.0 6e-12 >seq5142 Length=12213 Score = 109 bits (120), Expect = 5e-19 Identities = 102/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939 |||| ||||||||| |||||||| ||||| || || | ||| || ||||||||| || Sbjct 7171 AATCGTTGCTGATCAGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCG 7230 Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999 | |||||||| || || || | |||||||| |||||||||||||| || ||||| Sbjct 7231 ATAGTGTCAGAAGCTTCAACTTCGAGTGTGATGGTCTTTCCAGTAAGAGTCTTAACAAAA 7290 Query 95000 ATCTGCATGC 95009 |||||||||| Sbjct 7291 ATCTGCATGC 7300 Score = 105 bits (116), Expect = 6e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939 |||| |||||||| |||||||| ||||| ||||| | |||||||||||| || || Sbjct 7442 AATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCG 7501 Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999 | || |||| ||||| |||| ||||| ||||||||||||||||| || || ||| Sbjct 7502 ATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAG 7561 Query 95000 ATCTGCAT 95007 |||||||| Sbjct 7562 ATCTGCAT 7569 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||||||||| ||||| ||||| ||||| | |||||| |||||||| | | |||| Sbjct 6638 TGCTGATCTGGTGGAATGCCTTCCTTGTCCTGAATTTTGGCCTTGACATTTTCTATAGTG 6697 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 |||| || || || | ||||| || || ||||| | ||||||||| ||||| ||| Sbjct 6698 TCAGATGCCTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTCACGAAGATTTGC 6757 Query 95006 AT 95007 || Sbjct 6758 AT 6759 Score = 86.0 bits (94), Expect = 6e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 94873 AAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGAC 94932 ||||| |||| ||||||||| ||||| || ||||||||||| | ||| || |||||||| Sbjct 6896 AAAGACCAATCGTTGCTGATCAGGAGGGATTCCTTCTTTGTCCTGAATCTTGGCCTTGAC 6955 Query 94933 GGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTT 94992 | | | || |||| || || || | ||||| || ||||| || || || || Sbjct 6956 GTTTTCAATGGTATCAGAAGCTTCCACTTCTAGAGTGATTGTCTTTCCCGTGAGGGTCTT 7015 Query 94993 CACAAAGATCTGCAT 95007 ||||||| ||||||| Sbjct 7016 CACAAAGGTCTGCAT 7030 >seq2634 Length=16880 Score = 109 bits (120), Expect = 5e-19 Identities = 102/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939 |||| ||||||||| |||||||| ||||| || || | ||| || ||||||||| || Sbjct 1631 AATCGTTGCTGATCAGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCG 1690 Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999 | |||||||| || || || | |||||||| |||||||||||||| || ||||| Sbjct 1691 ATAGTGTCAGAAGCTTCAACTTCGAGTGTGATGGTCTTTCCAGTAAGAGTCTTAACAAAA 1750 Query 95000 ATCTGCATGC 95009 |||||||||| Sbjct 1751 ATCTGCATGC 1760 Score = 105 bits (116), Expect = 6e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939 |||| |||||||| |||||||| ||||| ||||| | |||||||||||| || || Sbjct 1902 AATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCG 1961 Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999 | || |||| ||||| |||| ||||| ||||||||||||||||| || || ||| Sbjct 1962 ATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAG 2021 Query 95000 ATCTGCAT 95007 |||||||| Sbjct 2022 ATCTGCAT 2029 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939 |||| ||||||||| |||||||| ||||||||||| | ||| || ||||||||| | Sbjct 1363 AATCGTTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCCTTGACGTTCTCA 1422 Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999 | || |||| || || || | ||||| || ||||| || || || ||||||||| Sbjct 1423 ATGGTATCAGACGCTTCCACTTCTAGAGTGATTGTCTTTCCCGTGAGGGTCTTCACAAAG 1482 Query 95000 ATCTGCAT 95007 |||||||| Sbjct 1483 ATCTGCAT 1490 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||||||||||||||| ||||| || || | ||| || ||||||||| ||| |||| Sbjct 1096 TGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCGATAGTG 1155 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 |||| || || || | ||||| || || ||||| | ||||||||| ||||| ||| Sbjct 1156 TCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTCACGAAGATTTGC 1215 Query 95006 AT 95007 || Sbjct 1216 AT 1217 >seq695 Length=26773 Score = 105 bits (116), Expect = 6e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939 |||| |||||||| |||||||| ||||| ||||| | |||||||||||| || || Sbjct 12184 AATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCG 12125 Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999 | || |||| ||||| |||| ||||| ||||||||||||||||| || || ||| Sbjct 12124 ATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTTACGAAG 12065 Query 95000 ATCTGCAT 95007 |||||||| Sbjct 12064 ATCTGCAT 12057 Score = 100 bits (110), Expect = 3e-16 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939 |||| ||||||||| || ||||| ||||| || || | ||| || ||||||||| || Sbjct 12455 AATCGTTGCTGATCAGGCGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCG 12396 Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999 | |||||||| || || || | |||||||| |||||||||||||| || || || Sbjct 12395 ATAGTGTCAGAAGCCTCAACTTCGAGAGTGATGGTCTTTCCAGTAAGAGTCTTAACGAAA 12336 Query 95000 ATCTGCATGC 95009 |||||||||| Sbjct 12335 ATCTGCATGC 12326 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939 |||| ||||||||| |||||||| ||||||||||| | ||| || ||||||||| | Sbjct 12726 AATCGTTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCCTTGACGTTCTCA 12667 Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999 | || |||| || || || | ||||| || ||||| || || || ||||||||| Sbjct 12666 ATGGTATCAGACGCTTCCACTTCTAGGGTGATTGTCTTTCCCGTGAGGGTCTTCACAAAG 12607 Query 95000 ATCTGCAT 95007 |||||||| Sbjct 12606 ATCTGCAT 12599 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||||||||||||||| ||||| || || | ||| || ||||||||| ||| |||| Sbjct 12993 TGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCGATAGTG 12934 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 |||| || || || | ||||| || || ||||| | |||||| || ||||| ||| Sbjct 12933 TCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTAACGAAGATTTGC 12874 Query 95006 AT 95007 || Sbjct 12873 AT 12872 >seq5365 Length=11941 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||||||||| ||||| || || ||||| | |||||| |||||||| | | ||| Sbjct 404 TGCTGATCTGGTGGAATGCCCTCCTTGTCTTGAATTTTGGCCTTGACATTTTCAATCGTG 345 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 |||| || || |||| || || || |||||||| |||||||| |||||||||||| Sbjct 344 TCAGATGCCTCAACTTCAAGAGTTATAGTCTTTCCAGTCAGAGTTTTGACAAAGATCTGC 285 Query 95006 AT 95007 || Sbjct 284 AT 283 >seq567 Length=28520 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||||||||| ||||| || || ||||| | |||||| |||||||| | | ||| Sbjct 7450 TGCTGATCTGGTGGAATGCCCTCCTTGTCTTGAATTTTGGCCTTGACATTTTCAATCGTG 7391 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 |||| || || |||| || || || |||||||| |||||||| |||||||||||| Sbjct 7390 TCAGATGCCTCAACTTCAAGAGTTATAGTCTTTCCAGTCAGAGTTTTGACAAAGATCTGC 7331 Query 95006 AT 95007 || Sbjct 7330 AT 7329 >seq16244 Length=5026 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||||||||||||||| ||||| || || | ||| || ||||||||| ||| |||| Sbjct 255 TGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCGATAGTG 196 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 |||| || || || | ||||| || || ||| | | ||||||||| ||||| ||| Sbjct 195 TCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCATTCAAAGTTTTCACGAAGATTTGC 136 Query 95006 AT 95007 || Sbjct 135 AT 134 >seq6254 Length=10896 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||||||||||||||| ||||| || || | ||| || ||||||||| ||| |||| Sbjct 10595 TGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCGATAGTG 10654 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 |||| || || || | ||||| || || ||||| | |||||| || ||||| ||| Sbjct 10655 TCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTAACGAAGATTTGC 10714 Query 95006 AT 95007 || Sbjct 10715 AT 10716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448115576318760