Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29]
31,341 sequences; 235,798,407 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq5142 109 5e-19
seq2634 109 5e-19
seq695 105 6e-18
seq5365 89.7 5e-13
seq567 89.7 5e-13
seq16244 86.0 6e-12
seq6254 86.0 6e-12
>seq5142
Length=12213
Score = 109 bits (120), Expect = 5e-19
Identities = 102/130 (78%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939
|||| ||||||||| |||||||| ||||| || || | ||| || ||||||||| ||
Sbjct 7171 AATCGTTGCTGATCAGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCG 7230
Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999
| |||||||| || || || | |||||||| |||||||||||||| || |||||
Sbjct 7231 ATAGTGTCAGAAGCTTCAACTTCGAGTGTGATGGTCTTTCCAGTAAGAGTCTTAACAAAA 7290
Query 95000 ATCTGCATGC 95009
||||||||||
Sbjct 7291 ATCTGCATGC 7300
Score = 105 bits (116), Expect = 6e-18
Identities = 100/128 (78%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939
|||| |||||||| |||||||| ||||| ||||| | |||||||||||| || ||
Sbjct 7442 AATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCG 7501
Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999
| || |||| ||||| |||| ||||| ||||||||||||||||| || || |||
Sbjct 7502 ATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAG 7561
Query 95000 ATCTGCAT 95007
||||||||
Sbjct 7562 ATCTGCAT 7569
Score = 86.0 bits (94), Expect = 6e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945
||||||||||| ||||| ||||| ||||| | |||||| |||||||| | | ||||
Sbjct 6638 TGCTGATCTGGTGGAATGCCTTCCTTGTCCTGAATTTTGGCCTTGACATTTTCTATAGTG 6697
Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005
|||| || || || | ||||| || || ||||| | ||||||||| ||||| |||
Sbjct 6698 TCAGATGCCTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTCACGAAGATTTGC 6757
Query 95006 AT 95007
||
Sbjct 6758 AT 6759
Score = 86.0 bits (94), Expect = 6e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 94873 AAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGAC 94932
||||| |||| ||||||||| ||||| || ||||||||||| | ||| || ||||||||
Sbjct 6896 AAAGACCAATCGTTGCTGATCAGGAGGGATTCCTTCTTTGTCCTGAATCTTGGCCTTGAC 6955
Query 94933 GGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTT 94992
| | | || |||| || || || | ||||| || ||||| || || || ||
Sbjct 6956 GTTTTCAATGGTATCAGAAGCTTCCACTTCTAGAGTGATTGTCTTTCCCGTGAGGGTCTT 7015
Query 94993 CACAAAGATCTGCAT 95007
||||||| |||||||
Sbjct 7016 CACAAAGGTCTGCAT 7030
>seq2634
Length=16880
Score = 109 bits (120), Expect = 5e-19
Identities = 102/130 (78%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939
|||| ||||||||| |||||||| ||||| || || | ||| || ||||||||| ||
Sbjct 1631 AATCGTTGCTGATCAGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCG 1690
Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999
| |||||||| || || || | |||||||| |||||||||||||| || |||||
Sbjct 1691 ATAGTGTCAGAAGCTTCAACTTCGAGTGTGATGGTCTTTCCAGTAAGAGTCTTAACAAAA 1750
Query 95000 ATCTGCATGC 95009
||||||||||
Sbjct 1751 ATCTGCATGC 1760
Score = 105 bits (116), Expect = 6e-18
Identities = 100/128 (78%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939
|||| |||||||| |||||||| ||||| ||||| | |||||||||||| || ||
Sbjct 1902 AATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCG 1961
Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999
| || |||| ||||| |||| ||||| ||||||||||||||||| || || |||
Sbjct 1962 ATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAG 2021
Query 95000 ATCTGCAT 95007
||||||||
Sbjct 2022 ATCTGCAT 2029
Score = 91.5 bits (100), Expect = 1e-13
Identities = 97/128 (76%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939
|||| ||||||||| |||||||| ||||||||||| | ||| || ||||||||| |
Sbjct 1363 AATCGTTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCCTTGACGTTCTCA 1422
Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999
| || |||| || || || | ||||| || ||||| || || || |||||||||
Sbjct 1423 ATGGTATCAGACGCTTCCACTTCTAGAGTGATTGTCTTTCCCGTGAGGGTCTTCACAAAG 1482
Query 95000 ATCTGCAT 95007
||||||||
Sbjct 1483 ATCTGCAT 1490
Score = 89.7 bits (98), Expect = 5e-13
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945
||||||||||||||||| ||||| || || | ||| || ||||||||| ||| ||||
Sbjct 1096 TGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCGATAGTG 1155
Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005
|||| || || || | ||||| || || ||||| | ||||||||| ||||| |||
Sbjct 1156 TCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTCACGAAGATTTGC 1215
Query 95006 AT 95007
||
Sbjct 1216 AT 1217
>seq695
Length=26773
Score = 105 bits (116), Expect = 6e-18
Identities = 100/128 (78%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939
|||| |||||||| |||||||| ||||| ||||| | |||||||||||| || ||
Sbjct 12184 AATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCG 12125
Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999
| || |||| ||||| |||| ||||| ||||||||||||||||| || || |||
Sbjct 12124 ATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTTACGAAG 12065
Query 95000 ATCTGCAT 95007
||||||||
Sbjct 12064 ATCTGCAT 12057
Score = 100 bits (110), Expect = 3e-16
Identities = 100/130 (77%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939
|||| ||||||||| || ||||| ||||| || || | ||| || ||||||||| ||
Sbjct 12455 AATCGTTGCTGATCAGGCGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCG 12396
Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999
| |||||||| || || || | |||||||| |||||||||||||| || || ||
Sbjct 12395 ATAGTGTCAGAAGCCTCAACTTCGAGAGTGATGGTCTTTCCAGTAAGAGTCTTAACGAAA 12336
Query 95000 ATCTGCATGC 95009
||||||||||
Sbjct 12335 ATCTGCATGC 12326
Score = 91.5 bits (100), Expect = 1e-13
Identities = 97/128 (76%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCG 94939
|||| ||||||||| |||||||| ||||||||||| | ||| || ||||||||| |
Sbjct 12726 AATCGTTGCTGATCAGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCCTTGACGTTCTCA 12667
Query 94940 ACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999
| || |||| || || || | ||||| || ||||| || || || |||||||||
Sbjct 12666 ATGGTATCAGACGCTTCCACTTCTAGGGTGATTGTCTTTCCCGTGAGGGTCTTCACAAAG 12607
Query 95000 ATCTGCAT 95007
||||||||
Sbjct 12606 ATCTGCAT 12599
Score = 86.0 bits (94), Expect = 6e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945
||||||||||||||||| ||||| || || | ||| || ||||||||| ||| ||||
Sbjct 12993 TGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCGATAGTG 12934
Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005
|||| || || || | ||||| || || ||||| | |||||| || ||||| |||
Sbjct 12933 TCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTAACGAAGATTTGC 12874
Query 95006 AT 95007
||
Sbjct 12873 AT 12872
>seq5365
Length=11941
Score = 89.7 bits (98), Expect = 5e-13
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945
||||||||||| ||||| || || ||||| | |||||| |||||||| | | |||
Sbjct 404 TGCTGATCTGGTGGAATGCCCTCCTTGTCTTGAATTTTGGCCTTGACATTTTCAATCGTG 345
Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005
|||| || || |||| || || || |||||||| |||||||| ||||||||||||
Sbjct 344 TCAGATGCCTCAACTTCAAGAGTTATAGTCTTTCCAGTCAGAGTTTTGACAAAGATCTGC 285
Query 95006 AT 95007
||
Sbjct 284 AT 283
>seq567
Length=28520
Score = 89.7 bits (98), Expect = 5e-13
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945
||||||||||| ||||| || || ||||| | |||||| |||||||| | | |||
Sbjct 7450 TGCTGATCTGGTGGAATGCCCTCCTTGTCTTGAATTTTGGCCTTGACATTTTCAATCGTG 7391
Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005
|||| || || |||| || || || |||||||| |||||||| ||||||||||||
Sbjct 7390 TCAGATGCCTCAACTTCAAGAGTTATAGTCTTTCCAGTCAGAGTTTTGACAAAGATCTGC 7331
Query 95006 AT 95007
||
Sbjct 7330 AT 7329
>seq16244
Length=5026
Score = 86.0 bits (94), Expect = 6e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945
||||||||||||||||| ||||| || || | ||| || ||||||||| ||| ||||
Sbjct 255 TGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCGATAGTG 196
Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005
|||| || || || | ||||| || || ||| | | ||||||||| ||||| |||
Sbjct 195 TCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCATTCAAAGTTTTCACGAAGATTTGC 136
Query 95006 AT 95007
||
Sbjct 135 AT 134
>seq6254
Length=10896
Score = 86.0 bits (94), Expect = 6e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945
||||||||||||||||| ||||| || || | ||| || ||||||||| ||| ||||
Sbjct 10595 TGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTCGATAGTG 10654
Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005
|||| || || || | ||||| || || ||||| | |||||| || ||||| |||
Sbjct 10655 TCAGAAGCTTCAACTTCGAGGGTGATAGTCTTCCCAGTCAAAGTTTTAACGAAGATTTGC 10714
Query 95006 AT 95007
||
Sbjct 10715 AT 10716
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448115576318760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |