Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2045 114 2e-21 seq2031 114 2e-21 seq19627 113 7e-21 seq4010 113 7e-21 seq1366 113 7e-21 seq2112 111 2e-20 seq1425 111 2e-20 seq461 111 2e-20 seq211 109 9e-20 seq12659 107 3e-19 seq24732 105 1e-18 seq9246 105 1e-18 seq7475 104 4e-18 >seq2045 Length=18601 Score = 114 bits (126), Expect = 2e-21 Identities = 114/145 (79%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | | |||| || |||||||||||||||||||||||||| || | Sbjct 2763 CGCAAAGCGTCACCGAA-AGGTCTTGCGGGATAACATCCAAGGAATCACCAAGCCGGCAA 2821 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | ||||| |||| |||||||||||||| || ||| | || || | | ||||| |||| Sbjct 2822 TTCGTCGATTGGCACGTCGTGGTGGAGTGAAACGTATTTCCGGGCTCATTTATGAGGAGA 2881 Query 16551 TTCGTGATGTTTTGAAGATCTTCCT 16575 ||| | |||| |||| ||||||| Sbjct 2882 CTCGAGGTGTTCTGAAAGTCTTCCT 2906 >seq2031 Length=18648 Score = 114 bits (126), Expect = 2e-21 Identities = 114/145 (79%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | | |||| || ||||||||||| |||||||||||||| || | Sbjct 12794 CGCAAAGCGTCACCGAAAAG-TCTTGCGTGATAACATCCAGGGAATCACCAAGCCGGCAA 12852 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||||||| ||||| |||||||||||||| || ||| | || || | | || || |||| Sbjct 12853 TCCGTCGACTGGCACGTCGTGGTGGAGTGAAACGTATTTCCGGGCTCATTTACGAGGAGA 12912 Query 16551 TTCGTGATGTTTTGAAGATCTTCCT 16575 ||| | |||| |||| ||||||| Sbjct 12913 CTCGAGGTGTTCTGAAAGTCTTCCT 12937 >seq19627 Length=4049 Score = 113 bits (124), Expect = 7e-21 Identities = 126/166 (76%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | | |||| || |||||||||||||||||||| ||||| || | Sbjct 3754 CGCAAAGCGTCACCGAAAAG-TCTTGCGTGATAACATCCAAGGAATCACAAAGCCGGCAA 3696 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||||||| |||| |||||||||||||| || ||| | || || | | || || |||| Sbjct 3695 TCCGTCGATTGGCACGTCGTGGTGGAGTGAAACGTATTTCCGGGCTCATTTACGAGGAGA 3636 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGC 16596 ||| | |||| |||| ||||||| | | || |||| ||| || Sbjct 3635 CTCGAGGTGTTCTGAAAGTCTTCCTTGAAAATGTGATCCGTGACGC 3590 >seq4010 Length=13875 Score = 113 bits (124), Expect = 7e-21 Identities = 126/166 (76%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | | |||| || |||||||||||||||||||| ||||| || | Sbjct 289 CGCAAAGCGTCACCGAAAAG-TCTTGCGTGATAACATCCAAGGAATCACAAAGCCGGCAA 231 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||||||| |||| |||||||||||||| || ||| | || || | | || || |||| Sbjct 230 TCCGTCGATTGGCACGTCGTGGTGGAGTGAAACGTATTTCCGGGCTCATTTACGAGGAGA 171 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGC 16596 ||| | |||| |||| ||||||| | | || |||| ||| || Sbjct 170 CTCGAGGTGTTCTGAAAGTCTTCCTTGAAAATGTGATCCGTGACGC 125 >seq1366 Length=21580 Score = 113 bits (124), Expect = 7e-21 Identities = 124/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | | || |||||||||||||||||||||||||| || || Sbjct 18866 CGCAAAGCGTCACCGAAAGGTTTTGCGTGATAACATCCAAGGAATCACCAAGCCGGCAAT 18925 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| |||| |||||||||||||| || ||| | || || | | || || |||| Sbjct 18926 CCGTCGATTGGCACGTCGTGGTGGAGTGAAACGTATTTCCGGGCTCATTTACGAGGAGAC 18985 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGC 16596 ||| | |||| |||| ||||||| | | || |||| ||| || Sbjct 18986 TCGAGGTGTTCTGAAAGTCTTCCTTGAAAATGTGATCCGTGACGC 19030 >seq2112 Length=18395 Score = 111 bits (122), Expect = 2e-20 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || || | | | | || |||||||||||||||||||| ||||| || || Sbjct 11317 CGCTAAGCGCCACCGAAAAGTTTTGCGTGATAACATCCAAGGAATCACAAAGCCGGCAAT 11258 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| |||| |||||||||||||| || ||| | || || | | || || |||| Sbjct 11257 CCGTCGATTGGCACGTCGTGGTGGAGTGAAACGTATTTCCGGGCTCATTTACGAGGAGAC 11198 Query 16552 TCGTGATGTTTTGAAGATCTTCCT 16575 ||| | |||| |||| ||||||| Sbjct 11197 TCGAGGTGTTCTGAAAGTCTTCCT 11174 >seq1425 Length=21266 Score = 111 bits (122), Expect = 2e-20 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| ||||| | | | | || |||||||||||||||||||| ||||| || || Sbjct 2631 CGCTAAGCGCCATCGAAAAGTTTTGCGTGATAACATCCAAGGAATCACAAAGCCGGCAAT 2572 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| |||| || ||||||||||| || ||| | || || | | || || |||| Sbjct 2571 CCGTCGATTGGCACGCCGTGGTGGAGTGAAACGTATTTCCGGGCTCATTTACGAGGAGAC 2512 Query 16552 TCGTGATGTTTTGAAGATCTTCCT 16575 ||| | |||| |||| ||||||| Sbjct 2511 TCGAGGTGTTCTGAAAGTCTTCCT 2488 >seq461 Length=29946 Score = 111 bits (122), Expect = 2e-20 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || || | | | | || |||||||||||||||||||| ||||| || || Sbjct 23368 CGCTAAGCGCCACCGAAAAGTTTTGCGTGATAACATCCAAGGAATCACAAAGCCGGCAAT 23427 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| |||| |||||||||||||| || ||| | || || | | || || |||| Sbjct 23428 CCGTCGATTGGCACGTCGTGGTGGAGTGAAACGTATTTCCGGGCTCATTTACGAGGAGAC 23487 Query 16552 TCGTGATGTTTTGAAGATCTTCCT 16575 ||| | |||| |||| ||||||| Sbjct 23488 TCGAGGTGTTCTGAAAGTCTTCCT 23511 >seq211 Length=36101 Score = 109 bits (120), Expect = 9e-20 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | | || |||||||||||||||||||||||||| || || Sbjct 31869 CGCAAAGCGTCACCGAAAGGTTTTGCGTGATAACATCCAAGGAATCACCAAGCCGGCAAT 31928 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| |||| |||||||||||||| || ||| | || || | | || || |||| Sbjct 31929 CCGTCGATTGGCACGTCGTGGTGGAGTGAAACGTATTTCCGGGCTCATTTACGAGGAGAC 31988 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGC 16596 ||| | |||| | || ||||||| | | || |||| ||| || Sbjct 31989 TCGAGGTGTTCTAAAAGTCTTCCTTGAAAATGTGATCCGTGACGC 32033 >seq12659 Length=6435 Score = 107 bits (118), Expect = 3e-19 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || | | | | | || |||||||||||||||||||| ||||| || || Sbjct 5174 CGCTAAGCGCCACAGAAAAGTTTTGCGTGATAACATCCAAGGAATCACAAAGCCGGCAAT 5233 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| |||| |||||||||||||| || ||| | || || | | || || |||| Sbjct 5234 CCGTCGATTGGCACGTCGTGGTGGAGTGAAACGTATTTCCGGGCTCATTTACGAGGAGAC 5293 Query 16552 TCGTGATGTTTTGAAGATCTTCCT 16575 ||| | |||| |||| ||||||| Sbjct 5294 TCGAGGTGTTCTGAAAGTCTTCCT 5317 >seq24732 Length=2969 Score = 105 bits (116), Expect = 1e-18 Identities = 112/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || || | | |||| || ||||||||||||||||||||||| || || | Sbjct 1562 CGCTAAGCGCCACCGAAAAG-TCTTGCGTGATAACATCCAAGGAATCACCAAACCGGCAA 1504 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || |||| |||||||||||||| || ||| | || || | | || || |||| Sbjct 1503 TCCGGCGATTGGCACGTCGTGGTGGAGTGAAACGTATTTCCGGGCTCATTTACGAGGAGA 1444 Query 16551 TTCGTGATGTTTTGAAGATCTTCCT 16575 ||| | |||| |||| ||||||| Sbjct 1443 CTCGAGGTGTTCTGAAAGTCTTCCT 1419 >seq9246 Length=8316 Score = 105 bits (116), Expect = 1e-18 Identities = 112/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | | |||| || |||||||||||||||||||| ||||| || | Sbjct 281 CGCGAAGCGTCACCGAAAAG-TCTTGCGTGATAACATCCAAGGAATCACAAAGCCGGCAA 339 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | ||||| |||| |||||||||||||| || ||| | || ||| | | || || |||| Sbjct 340 TTCGTCGATTGGCACGTCGTGGTGGAGTGAAACGTATTTCCGGACTCATTTACGAGGAGA 399 Query 16551 TTCGTGATGTTTTGAAGATCTTCCT 16575 ||| | |||| |||| | ||||| Sbjct 400 CTCGAGGTGTTCTGAAAGTTTTCCT 424 >seq7475 Length=9719 Score = 104 bits (114), Expect = 4e-18 Identities = 98/124 (79%), Gaps = 1/124 (1%) Strand=Plus/Plus Query 16453 TCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTG 16511 |||| || ||||||||||||||||| |||||||| || || ||||| |||| ||||||| Sbjct 55 TCTTGCGTGATAACATCCAAGGAATTACCAAGCCGGCAATTCGTCGATTGGCACGTCGTG 114 Query 16512 GTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCT 16571 ||||||| || ||| | || ||| | | || || |||| ||| | |||| |||| ||| Sbjct 115 GTGGAGTGAAACGTATTTCCGGACTCATTTACGAGGAGACTCGAGGTGTTCTGAAAGTCT 174 Query 16572 TCCT 16575 |||| Sbjct 175 TCCT 178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79046544704313