Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq15692 86.0 1e-11 seq5175 86.0 1e-11 >seq15692 Length=5223 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 194058 GGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGG 194117 |||||| | |||||| | ||||||||||| || ||| |||||||| || |||||| Sbjct 675 GGTAATATAAATGCTCGCCGTGATTGGGGACATGCTCGGGAATATGTTGAGGCAATGTGG 734 Query 194118 TTAATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGG 194164 | || || ||||| |||| || ||||||| ||| ||||||||||| Sbjct 735 ATGATATTACAACATAATGAGCCTGATGATTTTGTTATTGCTACAGG 781 >seq5175 Length=12175 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 194058 GGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGG 194117 |||||| | |||||| | ||||||||||| || ||| |||||||| || |||||| Sbjct 1804 GGTAATATAAATGCTCGCCGTGATTGGGGACATGCTCGGGAATATGTTGAGGCAATGTGG 1863 Query 194118 TTAATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGG 194164 | || || ||||| |||| || ||||||| ||| ||||||||||| Sbjct 1864 ATGATATTACAACATAATGAGCCTGATGATTTTGTTATTGCTACAGG 1910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807238830155960