Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq2786 107 2e-18 seq27688 104 2e-17 seq27347 104 2e-17 seq3049 104 2e-17 seq13787 95.1 1e-14 >seq2786 Length=16508 Score = 107 bits (118), Expect = 2e-18 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 21473 AAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTT 21532 ||||| |||||||| | ||| | |||||||| | | |||||||||||| ||| Sbjct 4172 AAACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGTGTC 4231 Query 21533 AAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAG 21592 | || ||||| || || | || |||| |||||| |||| ||||| ||| |||||| Sbjct 4232 AGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAAAAG 4291 Query 21593 AAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTA 21649 || || |||||||| || ||||| |||| | |||||||| ||| || ||||||| Sbjct 4292 AATATACCCTCAACTGCTGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCTTTA 4348 >seq27688 Length=2484 Score = 104 bits (114), Expect = 2e-17 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 21473 AAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTT 21532 ||||| |||||||| | ||| | |||||||| | | |||||||||||| ||| Sbjct 376 AAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGTGTC 317 Query 21533 AAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAG 21592 | || ||||| || || | || |||| |||||| |||| ||||| ||| || ||| Sbjct 316 AGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAAG 257 Query 21593 AAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTA 21649 || || |||||||| || ||||| |||| | |||||||| ||| || ||||||| Sbjct 256 AATATACCCTCAACTGCGGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCTTTA 200 >seq27347 Length=2531 Score = 104 bits (114), Expect = 2e-17 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 21473 AAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTT 21532 ||||| |||||||| | ||| | |||||||| | | |||||||||||| ||| Sbjct 201 AAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGTGTC 142 Query 21533 AAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAG 21592 | || ||||| || || | || |||| |||||| |||| ||||| ||| || ||| Sbjct 141 AGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAAG 82 Query 21593 AAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTA 21649 || || |||||||| || ||||| |||| | |||||||| ||| || ||||||| Sbjct 81 AATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCAAATGAAGCTTCTTTA 25 >seq3049 Length=15854 Score = 104 bits (114), Expect = 2e-17 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 21473 AAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTT 21532 ||||| |||||||| | ||| | |||||||| | | |||||||||||| ||| Sbjct 13778 AAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGTGTC 13837 Query 21533 AAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAG 21592 | || ||||| || || | || |||| |||||| |||| ||||| ||| || ||| Sbjct 13838 AGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAAG 13897 Query 21593 AAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTA 21649 || || |||||||| || ||||| |||| | |||||||| ||| || ||||||| Sbjct 13898 AATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCAAATGAAGCTTCTTTA 13954 >seq13787 Length=5932 Score = 95.1 bits (104), Expect = 1e-14 Identities = 126/175 (72%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 21475 ACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAA 21534 ||| |||||||| | ||| | |||||||| | | |||||||||||| ||| | Sbjct 757 ACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGTGTCAG 816 Query 21535 ACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAA 21594 || ||||| | || | || |||| |||||| |||| ||||| ||| || ||||| Sbjct 817 TCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAAGAA 876 Query 21595 AATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTA 21649 || |||||||| || ||||| |||| | |||||||| ||| || ||||||| Sbjct 877 TATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCTTTA 931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531692421212840