Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq490 113 6e-20 seq1624 111 2e-19 seq16867 102 1e-16 seq30683 98.7 1e-15 seq20812 89.7 6e-13 seq9293 86.0 8e-12 >seq490 Length=29575 Score = 113 bits (124), Expect = 6e-20 Identities = 197/287 (69%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 63366 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63425 || |||||||||||||| || || | || |||| ||||| ||||||||||||| Sbjct 6648 TTATTTCCTCCCTGATCAATATAGCGTGCCACAGAATTAAAAACTTGCAACATTGGAATA 6707 Query 63426 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTA 63485 || || || || | ||||| || || ||||| | || |||||||| | | Sbjct 6708 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGA 6767 Query 63486 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCA 63545 ||||| || || ||||| || ||| ||| ||||| | || || || |||| || ||| Sbjct 6768 ATTGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTTTCA 6827 Query 63546 TAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 63605 | || || || || ||| | | ||| ||| | |||||| ||| | ||| || Sbjct 6828 AAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 6887 Query 63606 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63652 || | || ||||| || ||||| || ||||| ||||| |||||||| Sbjct 6888 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 6934 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 63958 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGG 64017 |||| | ||||| ||||| ||||| |||||||| || || |||||||| || || | | Sbjct 7966 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 8025 Query 64018 CATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 64077 ||||||| || || ||||||| | || |||| ||| || |||| | | ||||||| Sbjct 8026 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCTACTTCAGCCGCCAAATTATCCAATT 8085 Query 64078 CTACCGTTGTTACTCCATTATATATTCCT 64106 | || |||||||||||| |||| || ||| Sbjct 8086 CAACAGTTGTTACTCCAGTATAAATGCCT 8114 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 62025 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 62084 ||||| | ||| ||||| ||||| || ||||| ||| | | |||||||| Sbjct 355 GTACGCAAATAATACATCCCCGTCTTCAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 414 Query 62085 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 62144 || | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| ||||| Sbjct 415 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 474 Query 62145 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 62204 || | | | ||| | |||||||| ||||| ||||||||||||||||| |||| Sbjct 475 AAAGGAGCTCGATCTACTGCCATTTTGATGATTTCACGTTGTGGAATTTCCCAAACAGTT 534 Query 62205 T--TATAAA-CTCGCTTAATATCTTCTGG 62230 | |||||| || || ||||||||||| Sbjct 535 TTGTATAAAGCT---TTGATATCTTCTGG 560 >seq1624 Length=20192 Score = 111 bits (122), Expect = 2e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 63958 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGG 64017 |||| | ||||| || |||||||| |||||||| || || |||||||| || || | | Sbjct 17458 TAAAAACCTTTTTCGTCTCCTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 17517 Query 64018 CATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 64077 |||||||||| || ||||||| | || |||| ||| || |||| | | ||||||| Sbjct 17518 CATAATCCGGGTGAACTGTAGTATTTGAAGCAGCTACTTCAGCCGCCAAATTATCCAATT 17577 Query 64078 CTACCGTTGTTACTCCATTATATATTCCT 64106 | || |||||||||||| |||| || ||| Sbjct 17578 CAACAGTTGTTACTCCAGTATAAATGCCT 17606 Score = 104 bits (114), Expect = 3e-17 Identities = 195/287 (68%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 63366 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63425 || |||||||||||||| || || | || |||| ||||| ||||||||||||| Sbjct 16035 TTATTTCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATTGGAATA 16094 Query 63426 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTA 63485 || || || || | ||||| || || ||||| | || |||||||| | Sbjct 16095 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGG 16154 Query 63486 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCA 63545 || || || || ||||| || ||| ||| ||||| | || || || |||| || ||| Sbjct 16155 ATGGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTTTCA 16214 Query 63546 TAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 63605 | || || || || ||| | | ||| ||| | |||||| ||| | ||| || Sbjct 16215 AAAATTCCTTCAATTGAATCTCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 16274 Query 63606 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63652 || | || ||||| || ||||| || ||||| ||||| |||||||| Sbjct 16275 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 16321 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 62025 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 62084 ||||| | ||| |||||||||||||| ||||| ||| | | |||||||| Sbjct 11634 GTACGCAAATAATACATTCCCGTTTTCAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 11693 Query 62085 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 62144 || | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| ||||| Sbjct 11694 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 11753 Query 62145 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 62204 || | | | || | |||||||| || || ||||||||||||||||| |||| Sbjct 11754 AAAGGAGCTCGATCAACTGCCATTTTGATAATTTCACGTTGTGGAATTTCCCAAACAGTT 11813 Query 62205 T--TATAAA-CTCGCTTAATATCTTCTGG 62230 | |||||| || || ||||||||||| Sbjct 11814 TTGTATAAAGCT---TTGATATCTTCTGG 11839 Score = 93.3 bits (102), Expect = 5e-14 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 63705 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTT 63764 || ||||| || || |||||||| ||||| ||||| || || ||||| | || || Sbjct 16535 TGTATTCCAACAGCAACACGCATCAACATATGCTGTGGCCTCTCAACTACTTTTCCATTG 16594 Query 63765 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTC 63823 ||| ||| | ||| ||| ||| | |||||||| |||||||| | || |||||| || Sbjct 16595 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGAAAA-TC 16653 Query 63824 TCGTTCGTAAATAATAACCGAGTTGAGTTT 63853 || || ||||||||||| || |||||||| Sbjct 16654 ACGATCATAAATAATAACTGAATTGAGTTT 16683 >seq16867 Length=4829 Score = 102 bits (112), Expect = 1e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 63958 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGG 64017 |||| | ||||| ||||| ||||| |||||||| || || |||||||| || || | | Sbjct 1898 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 1957 Query 64018 CATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 64077 ||||||| || || ||||||| | || || | ||| || |||| | | ||||||| Sbjct 1958 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCCACTTCAGCCGCCAAATTATCCAATT 2017 Query 64078 CTACCGTTGTTACTCCATTATATATTCCT 64106 | || |||||||||||| |||| || ||| Sbjct 2018 CAACAGTTGTTACTCCAGTATAAATGCCT 2046 Score = 98.7 bits (108), Expect = 1e-15 Identities = 194/287 (68%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 63366 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63425 || |||||||||||||| || || | || |||| ||||| ||||||||||||| Sbjct 278 TTATTTCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATTGGAATA 337 Query 63426 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTA 63485 || || || || | ||||| || || ||||| | || |||||||| | | Sbjct 338 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGA 397 Query 63486 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCA 63545 || || || || ||||| || ||| ||| || || | || || || || | || ||| Sbjct 398 ATGGAAAGTCCAATTCCTCCAGCCGATTTTGAAATATAAGCACAACGATTAATTGTTTCA 457 Query 63546 TAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 63605 | || || || || ||| | | ||| ||| | |||||| ||| | ||| || Sbjct 458 AAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 517 Query 63606 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63652 || | || ||||| || ||||| || ||||| ||||| |||||||| Sbjct 518 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 564 >seq30683 Length=2079 Score = 98.7 bits (108), Expect = 1e-15 Identities = 194/287 (68%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 63366 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63425 || || ||||||||||| || || | || |||| ||||| ||||||||||||| Sbjct 617 TTATTCCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATTGGAATA 558 Query 63426 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTA 63485 || || || || | ||||| || || ||||| | || |||||||| | Sbjct 557 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGG 498 Query 63486 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCA 63545 || || || || ||||| || ||| ||| ||||| | || || || |||| || ||| Sbjct 497 ATGGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTTTCA 438 Query 63546 TAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 63605 | || || || || ||| | | ||| ||| | |||||| ||| | ||| || Sbjct 437 AAAATTCCTTCAATTGAATCTCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 378 Query 63606 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63652 || | || ||||| || ||||| || ||||| ||||| |||||||| Sbjct 377 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 331 >seq20812 Length=3765 Score = 89.7 bits (98), Expect = 6e-13 Identities = 147/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 62025 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 62084 ||||| | ||| ||||| || || || ||||| ||| | | |||||||| Sbjct 789 GTACGCAAATAATACATCCCTGTCTTAAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 848 Query 62085 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 62144 || | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| ||||| Sbjct 849 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 908 Query 62145 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 62204 || | | | || | |||||||| ||||| ||||||||||||||||| |||| Sbjct 909 AAAGGAGCTCGATCAACTGCCATTTTGATGATTTCACGTTGTGGAATTTCCCAAACAGTT 968 Query 62205 T--TATAAA-CTCGCTTAATATCTTCTGG 62230 | |||||| || || ||||||||||| Sbjct 969 TTGTATAAAGCT---TTGATATCTTCTGG 994 >seq9293 Length=8283 Score = 86.0 bits (94), Expect = 8e-12 Identities = 146/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 62025 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 62084 ||||| | ||| ||||| || || || ||||| ||| | | |||||||| Sbjct 5302 GTACGCAAATAATACATCCCTGTCTTAAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 5361 Query 62085 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 62144 || | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| ||||| Sbjct 5362 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 5421 Query 62145 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 62204 || | | | || | |||||||| ||||| ||||||||||||||||| |||| Sbjct 5422 AAAGGAGCTCGATCAACTGCCATTTTGATGATTTCACGTTGTGGAATTTCCCAAACAGTT 5481 Query 62205 T--TATAAA-CTCGCTTAATATCTTCTGG 62230 | |||||| || || || |||||||| Sbjct 5482 TTGTATAAAGCT---TTGATGTCTTCTGG 5507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622703152647560