Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2786 118 3e-21 seq3049 113 1e-19 seq27347 107 5e-18 seq20812 91.5 4e-13 seq9293 84.2 6e-11 >seq2786 Length=16508 Score = 118 bits (130), Expect = 3e-21 Identities = 157/216 (73%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 22432 ATTAAGAATAAGGCAGATTGGGCGCTGAAATGGA-TG--AACAATGAACGTTCATTCGCG 22488 || ||||| || || |||||||| || |||| || | || ||| |||||| | Sbjct 4389 ATCAAGAAAAAAGCTGATTGGGCTCTTCGTTGGACTGCTAGTAAAGAAGCTTCATTTGGT 4330 Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 |||||||| ||||| ||||| | ||||| || || |||||||||||| ||| |||| Sbjct 4329 GAACGTCTCATTGCTTTTGCAGCAGTTGAGGGTATATTCTTTTCTGGAAGTTTTGCTGCA 4270 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 || ||||||||||| ||||| | ||||||| || || || ||||| |||||| Sbjct 4269 ATTTTTTGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAATT 4210 Query 22609 AGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGT 22644 |||||||| || |||||| |||||||| ||| Sbjct 4209 TCTCGAGATGAAGGACTTCATCGAGATTTTGCTTGT 4174 >seq3049 Length=15854 Score = 113 bits (124), Expect = 1e-19 Identities = 156/216 (72%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 22432 ATTAAGAATAAGGCAGATTGGGCGCTGAAATGGA-TG--AACAATGAACGTTCATTCGCG 22488 || ||||| || || |||||||| || |||| || | || ||| |||||| | Sbjct 13995 ATCAAGAAAAAAGCTGATTGGGCTCTTCGTTGGACTGCTAGTAAAGAAGCTTCATTTGGT 13936 Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 |||||||||||||| ||||| | ||||| || || ||||| |||||| ||| |||| Sbjct 13935 GAACGTCTTATTGCTTTTGCCGCAGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCA 13876 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 || ||||||||||| ||||| | ||||||| || || || ||||| |||||| Sbjct 13875 ATTTTTTGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAATT 13816 Query 22609 AGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGT 22644 || ||||| || |||||| |||||||| ||| Sbjct 13815 TCTCGTGATGAAGGACTTCATCGAGATTTTGCTTGT 13780 >seq27347 Length=2531 Score = 107 bits (118), Expect = 5e-18 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 22471 AATGAACGTTCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTT 22530 || ||| |||||| | |||||||||||||| ||||| | ||||| || || ||||| Sbjct 26 AAAGAAGCTTCATTTGGTGAACGTCTTATTGCTTTTGCCGCAGTTGAGGGTATATTCTTC 85 Query 22531 TCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACG 22590 |||||| ||| |||||| ||||||||||| ||||| | ||||||| || || || Sbjct 86 TCTGGAAGTTTTGCTGCAATTTTTTGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACA 145 Query 22591 TTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGT 22644 ||||| |||||| || ||||| || |||||| |||||||| ||| Sbjct 146 CAAAGTAATGAATTAATTTCTCGTGATGAAGGACTTCATCGAGATTTTGCTTGT 199 >seq20812 Length=3765 Score = 91.5 bits (100), Expect = 4e-13 Identities = 179/263 (68%), Gaps = 4/263 (2%) Strand=Plus/Minus Query 364896 CGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAA 364955 ||| || |||| |||| |||||||| | | || | | | |||||||| || || Sbjct 1067 CGGTCTCTGGGATGACCAAATGAAGAATCGTTTAATATCTGATGGAGGTTCTGTCCAAAA 1008 Query 364956 CATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCC-- 365013 ||| ||||| ||||||||| | || || | |||||||| || ||||||||| | Sbjct 1007 TATTGTTGGATTGCCAGAAGATATCAAAGCTTTATACAAAACTGTTTGGGAAATTCCACA 948 Query 365014 ATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCG 365073 | | ||| || || | ||||| | ||||| | | |||||||| || || || || Sbjct 947 ACGTGAAATC--ATCAAAATGGCAGTTGATCGAGCTCCTTTTATCGACCAAAGTCAATCT 890 Query 365074 TTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGG 365133 || || || || || | ||||| | || || |||| || |||||||||| | Sbjct 889 TTAAATTTACATATTGCTGATCCAACATATGCAAAAATTACCTCAATGCATTTCTTTGCT 830 Query 365134 TGGAAATCCGGTCTTAAGACAGG 365156 ||| || |||||||||||||| Sbjct 829 TGGGAAAATGGTCTTAAGACAGG 807 >seq9293 Length=8283 Score = 84.2 bits (92), Expect = 6e-11 Identities = 150/217 (69%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 364942 GGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTA 365001 |||||||| || || ||| ||||| |||||||| | || || | |||||||| || Sbjct 5534 GGTTCTGTCCAAAATATTGTTGGATTGCCAGAAGACATCAAAGCTTTATACAAAACTGTT 5475 Query 365002 TGGGAAATTTCC--ATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCT 365059 ||||||||| | | | ||| || || | ||||| | ||||| | | |||||||| Sbjct 5474 TGGGAAATTCCACAACGTGAAATC--ATCAAAATGGCAGTTGATCGAGCTCCTTTTATCG 5417 Query 365060 GTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCA 365119 || || || || || || || || || | ||||| | || || |||| || | Sbjct 5416 ACCAAAGTCAATCTTTAAATTTACATATTGCTGATCCAACATATGCAAAAATTACCTCAA 5357 Query 365120 TGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 ||||||||| | ||| || |||||||||||||| Sbjct 5356 TGCATTTCTTTGCTTGGGAAAATGGTCTTAAGACAGG 5320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302830229808662