Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29]
31,341 sequences; 235,798,407 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq2786 118 3e-21
seq3049 113 1e-19
seq27347 107 5e-18
seq20812 91.5 4e-13
seq9293 84.2 6e-11
>seq2786
Length=16508
Score = 118 bits (130), Expect = 3e-21
Identities = 157/216 (73%), Gaps = 3/216 (1%)
Strand=Plus/Minus
Query 22432 ATTAAGAATAAGGCAGATTGGGCGCTGAAATGGA-TG--AACAATGAACGTTCATTCGCG 22488
|| ||||| || || |||||||| || |||| || | || ||| |||||| |
Sbjct 4389 ATCAAGAAAAAAGCTGATTGGGCTCTTCGTTGGACTGCTAGTAAAGAAGCTTCATTTGGT 4330
Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548
|||||||| ||||| ||||| | ||||| || || |||||||||||| ||| ||||
Sbjct 4329 GAACGTCTCATTGCTTTTGCAGCAGTTGAGGGTATATTCTTTTCTGGAAGTTTTGCTGCA 4270
Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608
|| ||||||||||| ||||| | ||||||| || || || ||||| ||||||
Sbjct 4269 ATTTTTTGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAATT 4210
Query 22609 AGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGT 22644
|||||||| || |||||| |||||||| |||
Sbjct 4209 TCTCGAGATGAAGGACTTCATCGAGATTTTGCTTGT 4174
>seq3049
Length=15854
Score = 113 bits (124), Expect = 1e-19
Identities = 156/216 (72%), Gaps = 3/216 (1%)
Strand=Plus/Minus
Query 22432 ATTAAGAATAAGGCAGATTGGGCGCTGAAATGGA-TG--AACAATGAACGTTCATTCGCG 22488
|| ||||| || || |||||||| || |||| || | || ||| |||||| |
Sbjct 13995 ATCAAGAAAAAAGCTGATTGGGCTCTTCGTTGGACTGCTAGTAAAGAAGCTTCATTTGGT 13936
Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548
|||||||||||||| ||||| | ||||| || || ||||| |||||| ||| ||||
Sbjct 13935 GAACGTCTTATTGCTTTTGCCGCAGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCA 13876
Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608
|| ||||||||||| ||||| | ||||||| || || || ||||| ||||||
Sbjct 13875 ATTTTTTGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAATT 13816
Query 22609 AGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGT 22644
|| ||||| || |||||| |||||||| |||
Sbjct 13815 TCTCGTGATGAAGGACTTCATCGAGATTTTGCTTGT 13780
>seq27347
Length=2531
Score = 107 bits (118), Expect = 5e-18
Identities = 128/174 (74%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 22471 AATGAACGTTCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTT 22530
|| ||| |||||| | |||||||||||||| ||||| | ||||| || || |||||
Sbjct 26 AAAGAAGCTTCATTTGGTGAACGTCTTATTGCTTTTGCCGCAGTTGAGGGTATATTCTTC 85
Query 22531 TCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACG 22590
|||||| ||| |||||| ||||||||||| ||||| | ||||||| || || ||
Sbjct 86 TCTGGAAGTTTTGCTGCAATTTTTTGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACA 145
Query 22591 TTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGT 22644
||||| |||||| || ||||| || |||||| |||||||| |||
Sbjct 146 CAAAGTAATGAATTAATTTCTCGTGATGAAGGACTTCATCGAGATTTTGCTTGT 199
>seq20812
Length=3765
Score = 91.5 bits (100), Expect = 4e-13
Identities = 179/263 (68%), Gaps = 4/263 (2%)
Strand=Plus/Minus
Query 364896 CGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAA 364955
||| || |||| |||| |||||||| | | || | | | |||||||| || ||
Sbjct 1067 CGGTCTCTGGGATGACCAAATGAAGAATCGTTTAATATCTGATGGAGGTTCTGTCCAAAA 1008
Query 364956 CATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCC-- 365013
||| ||||| ||||||||| | || || | |||||||| || ||||||||| |
Sbjct 1007 TATTGTTGGATTGCCAGAAGATATCAAAGCTTTATACAAAACTGTTTGGGAAATTCCACA 948
Query 365014 ATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCG 365073
| | ||| || || | ||||| | ||||| | | |||||||| || || || ||
Sbjct 947 ACGTGAAATC--ATCAAAATGGCAGTTGATCGAGCTCCTTTTATCGACCAAAGTCAATCT 890
Query 365074 TTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGG 365133
|| || || || || | ||||| | || || |||| || |||||||||| |
Sbjct 889 TTAAATTTACATATTGCTGATCCAACATATGCAAAAATTACCTCAATGCATTTCTTTGCT 830
Query 365134 TGGAAATCCGGTCTTAAGACAGG 365156
||| || ||||||||||||||
Sbjct 829 TGGGAAAATGGTCTTAAGACAGG 807
>seq9293
Length=8283
Score = 84.2 bits (92), Expect = 6e-11
Identities = 150/217 (69%), Gaps = 4/217 (2%)
Strand=Plus/Minus
Query 364942 GGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTA 365001
|||||||| || || ||| ||||| |||||||| | || || | |||||||| ||
Sbjct 5534 GGTTCTGTCCAAAATATTGTTGGATTGCCAGAAGACATCAAAGCTTTATACAAAACTGTT 5475
Query 365002 TGGGAAATTTCC--ATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCT 365059
||||||||| | | | ||| || || | ||||| | ||||| | | ||||||||
Sbjct 5474 TGGGAAATTCCACAACGTGAAATC--ATCAAAATGGCAGTTGATCGAGCTCCTTTTATCG 5417
Query 365060 GTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCA 365119
|| || || || || || || || || | ||||| | || || |||| || |
Sbjct 5416 ACCAAAGTCAATCTTTAAATTTACATATTGCTGATCCAACATATGCAAAAATTACCTCAA 5357
Query 365120 TGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156
||||||||| | ||| || ||||||||||||||
Sbjct 5356 TGCATTTCTTTGCTTGGGAAAATGGTCTTAAGACAGG 5320
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1302830229808662
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |