Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq490 122 1e-22 seq1624 113 6e-20 seq30683 107 2e-18 seq16867 107 2e-18 seq13787 91.5 2e-13 seq2786 91.5 2e-13 seq20812 86.0 8e-12 seq3049 86.0 8e-12 >seq490 Length=29575 Score = 122 bits (134), Expect = 1e-22 Identities = 199/287 (69%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 63221 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63280 || |||||||||||||| || || | || |||| ||||| ||||||||||||| Sbjct 6648 TTATTTCCTCCCTGATCAATATAGCGTGCCACAGAATTAAAAACTTGCAACATTGGAATA 6707 Query 63281 ATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTA 63340 || ||||| || | ||||| || || ||||| | || |||||||| | | Sbjct 6708 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGA 6767 Query 63341 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 63400 ||||| || || ||||| || ||| ||| ||||| | || || || |||| || ||| Sbjct 6768 ATTGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTTTCA 6827 Query 63401 TAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 63460 | || || || || ||| | | ||| ||| | |||||| ||| | ||| || Sbjct 6828 AAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 6887 Query 63461 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCA 63507 || | || ||||| || ||||| || ||||| |||||||||||||| Sbjct 6888 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 6934 Score = 104 bits (114), Expect = 3e-17 Identities = 116/154 (75%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 63813 TAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGG 63872 |||| | ||||| ||||||||||| |||||||| || || ||||| || || || | | Sbjct 7966 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 8025 Query 63873 CATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 63932 ||||||| || || ||||||| | || |||| ||| || |||| | | ||||||| Sbjct 8026 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCTACTTCAGCCGCCAAATTATCCAATT 8085 Query 63933 CTACCGTTGTTACACCATTATATATTCCT-TGGA 63965 | || |||||||| ||| |||| || ||| |||| Sbjct 8086 CAACAGTTGTTACTCCAGTATAAATGCCTCTGGA 8119 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 61880 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 61939 ||||| | ||| ||||| ||||| || ||||| ||| | | |||||||| Sbjct 355 GTACGCAAATAATACATCCCCGTCTTCAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 414 Query 61940 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 61999 || | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| ||||| Sbjct 415 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 474 Query 62000 AAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTT 62059 || | | | ||| | |||||||| || || ||||||||||||||||| |||| Sbjct 475 AAAGGAGCTCGATCTACTGCCATTTTGATGATTTCACGTTGTGGAATTTCCCAAACAGTT 534 Query 62060 T--TATAAA-CTCGCTTAATATCTTCTGG 62085 | |||||| || || ||||||||||| Sbjct 535 TTGTATAAAGCT---TTGATATCTTCTGG 560 >seq1624 Length=20192 Score = 113 bits (124), Expect = 6e-20 Identities = 197/287 (69%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 63221 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63280 || |||||||||||||| || || | || |||| ||||| ||||||||||||| Sbjct 16035 TTATTTCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATTGGAATA 16094 Query 63281 ATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTA 63340 || ||||| || | ||||| || || ||||| | || |||||||| | Sbjct 16095 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGG 16154 Query 63341 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 63400 || || || || ||||| || ||| ||| ||||| | || || || |||| || ||| Sbjct 16155 ATGGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTTTCA 16214 Query 63401 TAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 63460 | || || || || ||| | | ||| ||| | |||||| ||| | ||| || Sbjct 16215 AAAATTCCTTCAATTGAATCTCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 16274 Query 63461 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCA 63507 || | || ||||| || ||||| || ||||| |||||||||||||| Sbjct 16275 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 16321 Score = 104 bits (114), Expect = 3e-17 Identities = 150/209 (72%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 61880 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 61939 ||||| | ||| |||||||||||||| ||||| ||| | | |||||||| Sbjct 11634 GTACGCAAATAATACATTCCCGTTTTCAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 11693 Query 61940 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 61999 || | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| ||||| Sbjct 11694 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 11753 Query 62000 AAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTT 62059 || | | | || | |||||||| ||||| ||||||||||||||||| |||| Sbjct 11754 AAAGGAGCTCGATCAACTGCCATTTTGATAATTTCACGTTGTGGAATTTCCCAAACAGTT 11813 Query 62060 T--TATAAA-CTCGCTTAATATCTTCTGG 62085 | |||||| || || ||||||||||| Sbjct 11814 TTGTATAAAGCT---TTGATATCTTCTGG 11839 Score = 98.7 bits (108), Expect = 1e-15 Identities = 115/154 (75%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 63813 TAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGG 63872 |||| | ||||| || || ||||| |||||||| || || ||||| || || || | | Sbjct 17458 TAAAAACCTTTTTCGTCTCCTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 17517 Query 63873 CATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 63932 |||||||||| || ||||||| | || |||| ||| || |||| | | ||||||| Sbjct 17518 CATAATCCGGGTGAACTGTAGTATTTGAAGCAGCTACTTCAGCCGCCAAATTATCCAATT 17577 Query 63933 CTACCGTTGTTACACCATTATATATTCCT-TGGA 63965 | || |||||||| ||| |||| || ||| |||| Sbjct 17578 CAACAGTTGTTACTCCAGTATAAATGCCTCTGGA 17611 Score = 93.3 bits (102), Expect = 5e-14 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 63560 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTT 63619 || ||||| || || |||||||| ||||| ||||| || || ||||| | || || Sbjct 16535 TGTATTCCAACAGCAACACGCATCAACATATGCTGTGGCCTCTCAACTACTTTTCCATTG 16594 Query 63620 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAAAGTC 63678 ||| ||| | ||| ||| ||| | |||||||| |||||||| | || |||||| || Sbjct 16595 ATTCGCAAAAGGTAAGATCGTTCAAGTGTTTTAAAGCCAAAATAAGTATAGTGAAAA-TC 16653 Query 63679 TCGTTCGTAAATAATAACCGAGTTGAGTTT 63708 || || ||||||||||| || |||||||| Sbjct 16654 ACGATCATAAATAATAACTGAATTGAGTTT 16683 >seq30683 Length=2079 Score = 107 bits (118), Expect = 2e-18 Identities = 196/287 (68%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 63221 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63280 || || ||||||||||| || || | || |||| ||||| ||||||||||||| Sbjct 617 TTATTCCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATTGGAATA 558 Query 63281 ATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTA 63340 || ||||| || | ||||| || || ||||| | || |||||||| | Sbjct 557 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGG 498 Query 63341 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 63400 || || || || ||||| || ||| ||| ||||| | || || || |||| || ||| Sbjct 497 ATGGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTTTCA 438 Query 63401 TAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 63460 | || || || || ||| | | ||| ||| | |||||| ||| | ||| || Sbjct 437 AAAATTCCTTCAATTGAATCTCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 378 Query 63461 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCA 63507 || | || ||||| || ||||| || ||||| |||||||||||||| Sbjct 377 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 331 >seq16867 Length=4829 Score = 107 bits (118), Expect = 2e-18 Identities = 196/287 (68%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 63221 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63280 || |||||||||||||| || || | || |||| ||||| ||||||||||||| Sbjct 278 TTATTTCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATTGGAATA 337 Query 63281 ATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTA 63340 || ||||| || | ||||| || || ||||| | || |||||||| | | Sbjct 338 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAAGCACGAATTGAATGA 397 Query 63341 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 63400 || || || || ||||| || ||| ||| || || | || || || || | || ||| Sbjct 398 ATGGAAAGTCCAATTCCTCCAGCCGATTTTGAAATATAAGCACAACGATTAATTGTTTCA 457 Query 63401 TAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 63460 | || || || || ||| | | ||| ||| | |||||| ||| | ||| || Sbjct 458 AAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGTGGA 517 Query 63461 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCA 63507 || | || ||||| || ||||| || ||||| |||||||||||||| Sbjct 518 CGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 564 Score = 98.7 bits (108), Expect = 1e-15 Identities = 115/154 (75%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 63813 TAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGG 63872 |||| | ||||| ||||||||||| |||||||| || || ||||| || || || | | Sbjct 1898 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 1957 Query 63873 CATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 63932 ||||||| || || ||||||| | || || | ||| || |||| | | ||||||| Sbjct 1958 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCCACTTCAGCCGCCAAATTATCCAATT 2017 Query 63933 CTACCGTTGTTACACCATTATATATTCCT-TGGA 63965 | || |||||||| ||| |||| || ||| |||| Sbjct 2018 CAACAGTTGTTACTCCAGTATAAATGCCTCTGGA 2051 >seq13787 Length=5932 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||||||| ||| |||||||| || ||||||||| |||||||| |||||||| || Sbjct 1065 ATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTTTCAATAGC 1124 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33040 ||||||||||| || || || | |||||| | || || |||||| | ||| ||||| Sbjct 1125 AATTTGAAATCCATAAAAACAACGAGCCTCTGGTATTTGAACTTCTTGAGCAAAACGTTC 1184 >seq2786 Length=16508 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||||||| ||| |||||||| || ||||||||| |||||||| |||||||| || Sbjct 4481 ATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTTTCAATAGC 4540 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33040 ||||||||||| || || || | |||||| | || || |||||| | ||| ||||| Sbjct 4541 AATTTGAAATCCATAAAAACAACGAGCCTCTGGTATTTGAACTTCTTGAGCAAAACGTTC 4600 Score = 86.0 bits (94), Expect = 8e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 32643 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAAT 32702 ||||||| || | ||||| || ||||| | || || || || |||| | ||||||| Sbjct 4157 AAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAAT 4216 Query 32703 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 32762 || || || ||||| ||||| | || || || || |||||||| || | ||| Sbjct 4217 TCATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCA 4276 Query 32763 AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAG 32809 || |||||||||||| || || || ||||| ||||| ||||| || Sbjct 4277 AAACTTCCAGAAAAGAATATACCCTCAACTGCTGCAAAAGCAATGAG 4323 >seq20812 Length=3765 Score = 86.0 bits (94), Expect = 8e-12 Identities = 146/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 61880 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 61939 ||||| | ||| ||||| || || || ||||| ||| | | |||||||| Sbjct 789 GTACGCAAATAATACATCCCTGTCTTAAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 848 Query 61940 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 61999 || | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| ||||| Sbjct 849 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 908 Query 62000 AAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTT 62059 || | | | || | |||||||| || || ||||||||||||||||| |||| Sbjct 909 AAAGGAGCTCGATCAACTGCCATTTTGATGATTTCACGTTGTGGAATTTCCCAAACAGTT 968 Query 62060 T--TATAAA-CTCGCTTAATATCTTCTGG 62085 | |||||| || || ||||||||||| Sbjct 969 TTGTATAAAGCT---TTGATATCTTCTGG 994 >seq3049 Length=15854 Score = 86.0 bits (94), Expect = 8e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||||||| ||| |||||||| || ||||||||| |||||||| |||||||| || Sbjct 14081 ATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTTTCAATAGC 14140 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33040 ||||||||||| || || || | ||| || | || || |||||| | ||| ||||| Sbjct 14141 AATTTGAAATCCATAAAAACAACGAGCTTCTGGTATTTGAACTTCTTGAGCAAAACGTTC 14200 Score = 82.4 bits (90), Expect = 1e-10 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 33159 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 33218 || || || || ||||| || || || | ||||||||||| | | ||| ||||| ||| Sbjct 14402 ACCTCCTCTACAGTCCAGAACGAAGCAACGGCCTTTTTATAAAATTGCCAAATGTCCTGA 14461 Query 33219 TATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGATTGGTTC 33271 |||| || |||||||||||||| | ||||||||||| | || | |||||| Sbjct 14462 TATTTGATCGGAAAAATAACAAAACGATTTGGATTTTCTCGCAGTAATGGTTC 14514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633383766743600