Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq22378 96.9 3e-15 seq3965 96.9 3e-15 seq5142 84.2 2e-11 >seq22378 Length=3416 Score = 96.9 bits (106), Expect = 3e-15 Identities = 99/127 (78%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || |||||||| |||||| | ||||| | |||||||| | || Sbjct 1934 AATGCAAATTTTTGTCAAAACTTTGACTGGTAAAACTATCACTCTTGAAGTGGAAGCCTC 1875 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || ||||| ||| |||| || |||| ||| |||||||| || ||||||||||| | Sbjct 1874 GGATACTATTGAGAACGTGAAAGCTAAAATTCAG-GACAAAGAGGGTATTCCACCTGATC 1816 Query 25117 AACAGCG 25123 | ||||| Sbjct 1815 AGCAGCG 1809 >seq3965 Length=13966 Score = 96.9 bits (106), Expect = 3e-15 Identities = 99/127 (78%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || |||||||| |||||| | ||||| | |||||||| | || Sbjct 1674 AATGCAAATTTTTGTCAAAACTTTGACTGGTAAAACTATCACTCTTGAAGTGGAAGCCTC 1615 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || ||||| ||| |||| || |||| ||| |||||||| || ||||||||||| | Sbjct 1614 GGATACTATTGAGAATGTGAAAGCTAAAATTCAG-GACAAAGAGGGTATTCCACCTGATC 1556 Query 25117 AACAGCG 25123 | ||||| Sbjct 1555 AGCAGCG 1549 >seq5142 Length=12213 Score = 84.2 bits (92), Expect = 2e-11 Identities = 98/130 (75%), Gaps = 8/130 (6%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || || |||||||| || || | ||||| ||||||| ||| | || Sbjct 6760 AATGCAAATCTTCGTGAAAACTTTGACTGGGAAGACTATCACCCTCGAAGTTGAGGCATC 6701 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 ||||||||| || |||| | || |||| ||| ||||| ||||| |||||||| | Sbjct 6700 TGACACTATAGAAAATGTCA---AGGCCAAAATTCA-GGACAAGGAAGGCATTCCACCAG 6645 Query 25114 ACCAACAGCG 25123 | || ||||| Sbjct 6644 ATCAGCAGCG 6635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433162482380915