Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29]
31,341 sequences; 235,798,407 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq22378 96.9 3e-15
seq3965 96.9 3e-15
seq5142 84.2 2e-11
>seq22378
Length=3416
Score = 96.9 bits (106), Expect = 3e-15
Identities = 99/127 (78%), Gaps = 2/127 (2%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
||||||||| ||||| || |||||||| |||||| | ||||| | |||||||| | ||
Sbjct 1934 AATGCAAATTTTTGTCAAAACTTTGACTGGTAAAACTATCACTCTTGAAGTGGAAGCCTC 1875
Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|| ||||| ||| |||| || |||| ||| |||||||| || ||||||||||| |
Sbjct 1874 GGATACTATTGAGAACGTGAAAGCTAAAATTCAG-GACAAAGAGGGTATTCCACCTGATC 1816
Query 25117 AACAGCG 25123
| |||||
Sbjct 1815 AGCAGCG 1809
>seq3965
Length=13966
Score = 96.9 bits (106), Expect = 3e-15
Identities = 99/127 (78%), Gaps = 2/127 (2%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
||||||||| ||||| || |||||||| |||||| | ||||| | |||||||| | ||
Sbjct 1674 AATGCAAATTTTTGTCAAAACTTTGACTGGTAAAACTATCACTCTTGAAGTGGAAGCCTC 1615
Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|| ||||| ||| |||| || |||| ||| |||||||| || ||||||||||| |
Sbjct 1614 GGATACTATTGAGAATGTGAAAGCTAAAATTCAG-GACAAAGAGGGTATTCCACCTGATC 1556
Query 25117 AACAGCG 25123
| |||||
Sbjct 1555 AGCAGCG 1549
>seq5142
Length=12213
Score = 84.2 bits (92), Expect = 2e-11
Identities = 98/130 (75%), Gaps = 8/130 (6%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
||||||||| || || || |||||||| || || | ||||| ||||||| ||| | ||
Sbjct 6760 AATGCAAATCTTCGTGAAAACTTTGACTGGGAAGACTATCACCCTCGAAGTTGAGGCATC 6701
Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113
||||||||| || |||| | || |||| ||| ||||| ||||| |||||||| |
Sbjct 6700 TGACACTATAGAAAATGTCA---AGGCCAAAATTCA-GGACAAGGAAGGCATTCCACCAG 6645
Query 25114 ACCAACAGCG 25123
| || |||||
Sbjct 6644 ATCAGCAGCG 6635
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433162482380915
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |