Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29]
31,341 sequences; 235,798,407 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq2786 118 1e-21
seq3049 111 2e-19
seq13787 102 9e-17
seq27688 100 3e-16
>seq2786
Length=16508
Score = 118 bits (130), Expect = 1e-21
Identities = 162/224 (72%), Gaps = 2/224 (1%)
Strand=Plus/Plus
Query 93088 TAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGT 93147
||| || ||||| || ||| | ||||| ||||| || || || ||||| || |||
Sbjct 4171 TAAACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGTGT 4230
Query 93148 TAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaa 93207
| || || | | || |||||||| |||||||| |||| ||||||||| ||||||||
Sbjct 4231 CAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAAAA 4290
Query 93208 aaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACT 93267
|||||||| || || |||||||| || | | |||||| |||| || |||||
Sbjct 4291 GAATATACCCTCAACTGCTGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCTTTACT 4350
Query 93268 -GCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAA 93310
|| | |||| | ||||||||| ||||||||||| ||| ||
Sbjct 4351 AGCAG-TCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAA 4393
>seq3049
Length=15854
Score = 111 bits (122), Expect = 2e-19
Identities = 274/419 (65%), Gaps = 39/419 (9%)
Strand=Plus/Plus
Query 93088 TAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGT 93147
||| || ||||| || ||| | ||||| || || || || || ||||| || |||
Sbjct 13777 TAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGTGT 13836
Query 93148 TAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaa 93207
| || || | | || |||||||| |||||||| |||| ||||||||| ||||| ||
Sbjct 13837 CAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAA 13896
Query 93208 aaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACT 93267
|||||||| || || || ||||| || | || |||||| |||| || |||||
Sbjct 13897 GAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCAAATGAAGCTTCTTTACT 13956
Query 93268 -GCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATA----CAAGGTAGTGT---- 93318
|| | |||| | ||||||||| ||||||||||| ||| ||| | | |
Sbjct 13957 AGCAG-TCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAACTCGAATATAG 14015
Query 93319 --TTCGATAGCGTT------------AAAT---------------AGGTAATCTCGCTCG 93349
|| | | | || |||| ||| ||| || ||
Sbjct 14016 CATTAAACAACTTTGAACTATTAAAAAAATTTTTTAATCTAAAGAAGGAAATACCGTTCA 14075
Query 93350 TCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCC 93409
|| |||| || || ||||| ||||| ||||||||||| ||||| | ||| ||
Sbjct 14076 ATCGGATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTTTCA 14135
Query 93410 ATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAA 93468
|| |||||||| ||||| || ||||| | |||||| | || || |||||||||| |||
Sbjct 14136 ATAGCAATTTGAAATCCATAAAAACAACGAGCTTCTGGTATTTGAACTTCTTGAGCAAA 14194
>seq13787
Length=5932
Score = 102 bits (112), Expect = 9e-17
Identities = 156/220 (71%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151
|| ||||| || ||| | ||||| ||||| || || || ||||| || ||| |
Sbjct 758 CAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGTGTCAGT 817
Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211
|| || | || |||||||| |||||||| |||| ||||||||| ||||| || |||
Sbjct 818 CCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAAGAAT 877
Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACT-GCT 93270
||||| || || || ||||| || | | |||||| |||| || ||||| ||
Sbjct 878 ATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCTTTACTAGCA 937
Query 93271 GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAA 93310
| |||| | ||||||||| ||||||||||| ||| ||
Sbjct 938 G-TCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAA 976
>seq27688
Length=2484
Score = 100 bits (110), Expect = 3e-16
Identities = 154/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 93088 TAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGT 93147
||| || ||||| || ||| | ||||| || || || || || ||||| || |||
Sbjct 377 TAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGTGT 318
Query 93148 TAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaa 93207
| || || | | || |||||||| |||||||| |||| ||||||||| ||||| ||
Sbjct 317 CAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAA 258
Query 93208 aaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACT 93267
|||||||| || || || ||||| || | | |||||| |||| || |||||
Sbjct 257 GAATATACCCTCAACTGCGGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCTTTACT 198
Query 93268 -GCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTT 93303
|| | |||| | ||||||||| |||||||||||
Sbjct 197 AGCAG-TCCAACGAAGAGCCCAATCAGCTTTTTTCTT 162
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556642642820840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |