Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2786 118 1e-21 seq3049 111 2e-19 seq13787 102 9e-17 seq27688 100 3e-16 >seq2786 Length=16508 Score = 118 bits (130), Expect = 1e-21 Identities = 162/224 (72%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 93088 TAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGT 93147 ||| || ||||| || ||| | ||||| ||||| || || || ||||| || ||| Sbjct 4171 TAAACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGTGT 4230 Query 93148 TAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaa 93207 | || || | | || |||||||| |||||||| |||| ||||||||| |||||||| Sbjct 4231 CAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAAAA 4290 Query 93208 aaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACT 93267 |||||||| || || |||||||| || | | |||||| |||| || ||||| Sbjct 4291 GAATATACCCTCAACTGCTGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCTTTACT 4350 Query 93268 -GCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAA 93310 || | |||| | ||||||||| ||||||||||| ||| || Sbjct 4351 AGCAG-TCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAA 4393 >seq3049 Length=15854 Score = 111 bits (122), Expect = 2e-19 Identities = 274/419 (65%), Gaps = 39/419 (9%) Strand=Plus/Plus Query 93088 TAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGT 93147 ||| || ||||| || ||| | ||||| || || || || || ||||| || ||| Sbjct 13777 TAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGTGT 13836 Query 93148 TAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaa 93207 | || || | | || |||||||| |||||||| |||| ||||||||| ||||| || Sbjct 13837 CAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAA 13896 Query 93208 aaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACT 93267 |||||||| || || || ||||| || | || |||||| |||| || ||||| Sbjct 13897 GAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCAAATGAAGCTTCTTTACT 13956 Query 93268 -GCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATA----CAAGGTAGTGT---- 93318 || | |||| | ||||||||| ||||||||||| ||| ||| | | | Sbjct 13957 AGCAG-TCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAACTCGAATATAG 14015 Query 93319 --TTCGATAGCGTT------------AAAT---------------AGGTAATCTCGCTCG 93349 || | | | || |||| ||| ||| || || Sbjct 14016 CATTAAACAACTTTGAACTATTAAAAAAATTTTTTAATCTAAAGAAGGAAATACCGTTCA 14075 Query 93350 TCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCC 93409 || |||| || || ||||| ||||| ||||||||||| ||||| | ||| || Sbjct 14076 ATCGGATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTTTCA 14135 Query 93410 ATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAA 93468 || |||||||| ||||| || ||||| | |||||| | || || |||||||||| ||| Sbjct 14136 ATAGCAATTTGAAATCCATAAAAACAACGAGCTTCTGGTATTTGAACTTCTTGAGCAAA 14194 >seq13787 Length=5932 Score = 102 bits (112), Expect = 9e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151 || ||||| || ||| | ||||| ||||| || || || ||||| || ||| | Sbjct 758 CAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGTGTCAGT 817 Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211 || || | || |||||||| |||||||| |||| ||||||||| ||||| || ||| Sbjct 818 CCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAAGAAT 877 Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACT-GCT 93270 ||||| || || || ||||| || | | |||||| |||| || ||||| || Sbjct 878 ATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCTTTACTAGCA 937 Query 93271 GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAA 93310 | |||| | ||||||||| ||||||||||| ||| || Sbjct 938 G-TCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAA 976 >seq27688 Length=2484 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 93088 TAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGT 93147 ||| || ||||| || ||| | ||||| || || || || || ||||| || ||| Sbjct 377 TAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGTGT 318 Query 93148 TAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaa 93207 | || || | | || |||||||| |||||||| |||| ||||||||| ||||| || Sbjct 317 CAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAA 258 Query 93208 aaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACT 93267 |||||||| || || || ||||| || | | |||||| |||| || ||||| Sbjct 257 GAATATACCCTCAACTGCGGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCTTTACT 198 Query 93268 -GCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTT 93303 || | |||| | ||||||||| ||||||||||| Sbjct 197 AGCAG-TCCAACGAAGAGCCCAATCAGCTTTTTTCTT 162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556642642820840