Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq3965 127 2e-24 seq22378 123 2e-23 seq567 100 2e-16 seq8275 95.1 1e-14 seq18458 91.5 1e-13 seq15966 87.8 2e-12 seq9420 87.8 2e-12 seq5142 87.8 2e-12 seq2634 87.8 2e-12 seq1871 87.8 2e-12 seq695 87.8 2e-12 seq20812 86.0 5e-12 seq5333 86.0 5e-12 seq18228 82.4 6e-11 seq12969 82.4 6e-11 seq5365 82.4 6e-11 >seq3965 Length=13966 Score = 127 bits (140), Expect = 2e-24 Identities = 105/128 (82%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| |||||||| || |||||||| ||||||||||||||||| || | Sbjct 1673 ATGCAAATTTTTGTCAAAACTTTGACTGGTAAAACTATCACTCTTGAAGTGGAAGCCTCG 1614 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| |||||||| ||||| |||||||||||||| ||||| Sbjct 1613 GATACTATTGAGAATGTGAAAGCTAAAATTCAGGACAAAGAGGGTATTCCACCTGATCAG 1554 Query 22339 CAACGTCT 22346 || ||||| Sbjct 1553 CAGCGTCT 1546 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || |||||||| || || || | ||||||||||| || | | Sbjct 1135 ATGCAAATCTTTGTCAAGACTTTAACTGGAAAGACTATTACTCTTGAAGTTGAGGCATCT 1076 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| |||||||||||||||||||| ||||| || ||||| Sbjct 1075 GACACGATTGAAAATGTCAAGGCCAAAATTCAAGACAAGGAGGGGATTCCGCCAGATCAG 1016 Query 22339 CAACG 22343 || || Sbjct 1015 CAGCG 1011 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/140 (74%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| || || || || || || | ||||| ||||| || | | Sbjct 1405 ATGCAAATTTTCGTTAAGACGTTGACAGGCAAGACTATAACTCTCGAAGTTGAGGCATCG 1346 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | ||||| |||||||||||||| ||||| |||||||| || || Sbjct 1345 GATACGATTGAAAACGTCAAAGCCAAAATTCAAGACAAAGAGGGGATTCCACCAGACCAG 1286 Query 22339 CAACGTCT--TATATTTGCC 22356 || ||||| | | |||||| Sbjct 1285 CAGCGTCTGGTTTGTTTGCC 1266 >seq22378 Length=3416 Score = 123 bits (136), Expect = 2e-23 Identities = 104/128 (81%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| |||||||| || |||||||| ||||||||||||||||| || | Sbjct 1933 ATGCAAATTTTTGTCAAAACTTTGACTGGTAAAACTATCACTCTTGAAGTGGAAGCCTCG 1874 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | | ||| |||||||| ||||| |||||||||||||| ||||| Sbjct 1873 GATACTATTGAGAACGTGAAAGCTAAAATTCAGGACAAAGAGGGTATTCCACCTGATCAG 1814 Query 22339 CAACGTCT 22346 || ||||| Sbjct 1813 CAGCGTCT 1806 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/140 (74%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| || || || || || || | ||||| ||||| || | | Sbjct 1666 ATGCAAATTTTCGTTAAGACGTTGACAGGCAAGACTATAACTCTCGAAGTTGAGGCATCG 1607 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | ||||| |||||||||||||| ||||| |||||||| || || Sbjct 1606 GATACGATTGAAAACGTCAAAGCCAAAATTCAAGACAAAGAGGGGATTCCACCAGACCAG 1547 Query 22339 CAACGTCT--TATATTTGCC 22356 || ||||| | | |||||| Sbjct 1546 CAGCGTCTGGTTTGTTTGCC 1527 >seq567 Length=28520 Score = 100 bits (110), Expect = 2e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| || | || || || || | ||||| ||||||||| || | Sbjct 6793 ATGCAAATTTTTGTTAAGACACTTACGGGAAAGACTATTACTCTGGAAGTGGAAGCCTCG 6852 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| || ||||| |||||||||||||||||||| ||||| Sbjct 6853 GATACTATTGAGAATGTGAAAGCTAAGATTCAGGACAAGGAGGGTATTCCACCTGATCAG 6912 Query 22339 CAACGTCT 22346 || ||||| Sbjct 6913 CAGCGTCT 6920 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| |||||| | || || || || | ||||||||||| || | | Sbjct 7329 ATGCAGATCTTTGTCAAAACTCTGACTGGAAAGACTATAACTCTTGAAGTTGAGGCATCT 7388 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| |||||||||||||||||||| |||||||| ||||| Sbjct 7389 GACACGATTGAAAATGTCAAGGCCAAAATTCAAGACAAGGAGGGCATTCCACCAGATCAG 7448 Query 22339 CAACG 22343 || || Sbjct 7449 CAGCG 7453 >seq8275 Length=9039 Score = 95.1 bits (104), Expect = 1e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 || |||||| |||||||| |||||||||||||| || || | || |||||||| || | Sbjct 3962 AAGGATGCAGATTTTTGTCAAAACTTTAACCGGAAAGACTATTACGCTTGAAGTTGAGGC 4021 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 |||| || | || || | || || |||||||| |||||||| |||||||| || Sbjct 4022 ATCCGACACGATTGAAAATGTTAAGGCCAAGATTCAAGATAAGGAGGGCATTCCACCGGA 4081 Query 22335 TCAACAACGT 22344 |||||| ||| Sbjct 4082 TCAACAGCGT 4091 >seq18458 Length=4373 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || |||||||| || || || ||||||||||||| || | | Sbjct 4172 ATGCAAATCTTTGTCAAGACTTTAACTGGAAAGACTATCACTCTTGAAGTTGAGGCATCT 4113 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| |||||||||||||||||||| ||||| || ||||| Sbjct 4112 GACACGATTGAAAATGTCAAGGCCAAAATTCAAGACAAGGAGGGGATTCCGCCAGATCAG 4053 Query 22339 CAACG 22343 || || Sbjct 4052 CAGCG 4048 >seq15966 Length=5121 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273 |||| ||||| |||||||| || ||| | ||||| ||||| | ||||| || || || Sbjct 800 TAAATATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAGG 859 Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333 | | |||||| | || || | || |||||||||||| || |||||||| || || | Sbjct 860 CTTCTGATACCATTGAGAATGTTAAGGCAAAAATTCAAGATAAAGAGGGTATCCCGCCTG 919 Query 22334 ATCAACAACGT 22344 ||||||| ||| Sbjct 920 ATCAACAGCGT 930 >seq9420 Length=8200 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273 |||| ||||| |||||||| || ||| | ||||| ||||| | ||||| || || || Sbjct 7285 TAAATATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAGG 7226 Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333 | | |||||| | || || | || |||||||||||| || |||||||| || || | Sbjct 7225 CTTCTGATACCATTGAGAATGTTAAGGCAAAAATTCAAGATAAAGAGGGTATCCCGCCTG 7166 Query 22334 ATCAACAACGT 22344 ||||||| ||| Sbjct 7165 ATCAACAGCGT 7155 >seq5142 Length=12213 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || || || || ||| | || || |||||| ||||||||||||| || | Sbjct 7572 AATATGCAGATCTTCGTCAAGACTCTTACTGGAAAAACGATCACTCTTGAAGTCGAGGCT 7513 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | |||||| | || || | || |||||||||||||||||| || ||||| || ||| Sbjct 7512 TCTGATACCATCGAAAATGTGAAGGCAAAAATTCAAGACAAGGAAGGCATTCCTCCTGAT 7453 Query 22336 CAACAACG 22343 || || || Sbjct 7452 CAGCAGCG 7445 >seq2634 Length=16880 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || || || || ||| | || || |||||| ||||||||||||| || | Sbjct 2032 AATATGCAGATCTTCGTCAAGACTCTTACTGGAAAAACGATCACTCTTGAAGTCGAGGCT 1973 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | |||||| | || || | || |||||||||||||||||| || ||||| || ||| Sbjct 1972 TCTGATACCATCGAAAATGTGAAGGCAAAAATTCAAGACAAGGAAGGCATTCCTCCTGAT 1913 Query 22336 CAACAACG 22343 || || || Sbjct 1912 CAGCAGCG 1905 >seq1871 Length=19151 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273 |||| ||||| |||||||| || ||| | ||||| ||||| | ||||| || || || Sbjct 11463 TAAATATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAGG 11522 Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333 | | |||||| | || || | || |||||||||||| || |||||||| || || | Sbjct 11523 CTTCTGATACCATTGAGAATGTTAAGGCAAAAATTCAAGATAAAGAGGGTATCCCGCCTG 11582 Query 22334 ATCAACAACGT 22344 ||||||| ||| Sbjct 11583 ATCAACAGCGT 11593 >seq695 Length=26773 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || || || || ||| | || || |||||| ||||||||||||| || | Sbjct 12054 AATATGCAGATCTTCGTAAAGACTCTTACTGGAAAAACGATCACTCTTGAAGTCGAGGCT 12113 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | |||||| | || || | || |||||||||||||||||| || ||||| || ||| Sbjct 12114 TCTGATACCATCGAAAATGTGAAGGCAAAAATTCAAGACAAGGAAGGCATTCCTCCTGAT 12173 Query 22336 CAACAACG 22343 || || || Sbjct 12174 CAGCAGCG 12181 >seq20812 Length=3765 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 129400 GCCAATTCGCAACTCGCTTCCAATGCGCCAAAATAAATTGTTTCGGCAATTTTGGTGTTC 129459 ||||| |||||| ||||||||||| ||| |||| |||||||| ||||| |||| Sbjct 2196 GCCAACTCGCAAGAAGCTTCCAATGCACCATAATATATTGTTTCAAAAATTTGTTTGTTT 2255 Query 129460 AACACTTTGGCCTGGTCGCTTTCGTACGGCATACGCAACATGGCAAATGTGTCGGCCAAA 129519 ||| |||||||||||||||| | | || | ||||| || ||| | ||||||||| Sbjct 2256 AACTCTTTGGCCTGGTCGCTAACAAAAGGAAAACGCATCAAAATAAAAGCATCGGCCAAA 2315 Query 129520 CC 129521 || Sbjct 2316 CC 2317 >seq5333 Length=11984 Score = 86.0 bits (94), Expect = 5e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 || |||||| |||||||| ||||||||||| || || || | || |||||||| || | Sbjct 8042 AAGGATGCAGATTTTTGTCAAAACTTTAACTGGAAAGACTATTACGCTTGAAGTTGAGGC 8101 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 |||| || | || || | || || |||||||| |||||||| ||||| || || Sbjct 8102 ATCCGACACGATTGAAAATGTTAAGGCCAAGATTCAAGATAAGGAGGGCATTCCGCCGGA 8161 Query 22335 TCAACAACGT 22344 |||||| ||| Sbjct 8162 TCAACAGCGT 8171 >seq18228 Length=4442 Score = 82.4 bits (90), Expect = 6e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 || |||||| |||||||| || ||||||||||| || || | || |||||||| || | Sbjct 2960 AAGGATGCAGATTTTTGTCAAGACTTTAACCGGAAAGACTATTACGCTTGAAGTTGAGGC 3019 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | || || | || || | || || |||||||| |||||||| ||||| || || Sbjct 3020 GTCTGACACGATTGAAAATGTTAAGGCCAAGATTCAAGATAAGGAGGGCATTCCGCCGGA 3079 Query 22335 TCAACAACGT 22344 |||||| ||| Sbjct 3080 TCAACAGCGT 3089 >seq12969 Length=6291 Score = 82.4 bits (90), Expect = 6e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 || |||||| |||||||| || ||||||||||| || || | || |||||||| || | Sbjct 1491 AAGGATGCAGATTTTTGTCAAGACTTTAACCGGAAAGACTATTACGCTTGAAGTTGAGGC 1432 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | || || | || || | || || |||||||| |||||||| ||||| || || Sbjct 1431 GTCTGACACGATTGAAAATGTTAAGGCCAAGATTCAAGATAAGGAGGGCATTCCGCCGGA 1372 Query 22335 TCAACAACGT 22344 |||||| ||| Sbjct 1371 TCAACAGCGT 1362 >seq5365 Length=11941 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| |||||| | || || || || | ||||||||||| || | | Sbjct 283 ATGCAGATCTTTGTCAAAACTCTGACTGGAAAGACTATAACTCTTGAAGTTGAGGCATCT 342 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| |||||||||||||||||||| |||||||| ||||| Sbjct 343 GACACGATTGAAAATGTCAAGGCCAAAATTCAAGACAAGGAGGGCATTCCACCAGATCAG 402 Query 22339 CAACG 22343 || || Sbjct 403 CAGCG 407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419567677151665