Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29]
31,341 sequences; 235,798,407 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq3965 127 2e-24
seq22378 123 2e-23
seq567 100 2e-16
seq8275 95.1 1e-14
seq18458 91.5 1e-13
seq15966 87.8 2e-12
seq9420 87.8 2e-12
seq5142 87.8 2e-12
seq2634 87.8 2e-12
seq1871 87.8 2e-12
seq695 87.8 2e-12
seq20812 86.0 5e-12
seq5333 86.0 5e-12
seq18228 82.4 6e-11
seq12969 82.4 6e-11
seq5365 82.4 6e-11
>seq3965
Length=13966
Score = 127 bits (140), Expect = 2e-24
Identities = 105/128 (82%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||||||||| |||||||| || |||||||| ||||||||||||||||| || |
Sbjct 1673 ATGCAAATTTTTGTCAAAACTTTGACTGGTAAAACTATCACTCTTGAAGTGGAAGCCTCG 1614
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | ||| |||||||| ||||| |||||||||||||| |||||
Sbjct 1613 GATACTATTGAGAATGTGAAAGCTAAAATTCAGGACAAAGAGGGTATTCCACCTGATCAG 1554
Query 22339 CAACGTCT 22346
|| |||||
Sbjct 1553 CAGCGTCT 1546
Score = 86.0 bits (94), Expect = 5e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| ||||| || |||||||| || || || | ||||||||||| || | |
Sbjct 1135 ATGCAAATCTTTGTCAAGACTTTAACTGGAAAGACTATTACTCTTGAAGTTGAGGCATCT 1076
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | || || |||| |||||||||||||||||||| ||||| || |||||
Sbjct 1075 GACACGATTGAAAATGTCAAGGCCAAAATTCAAGACAAGGAGGGGATTCCGCCAGATCAG 1016
Query 22339 CAACG 22343
|| ||
Sbjct 1015 CAGCG 1011
Score = 84.2 bits (92), Expect = 2e-11
Identities = 103/140 (74%), Gaps = 2/140 (1%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||| ||||| || || || || || || | ||||| ||||| || | |
Sbjct 1405 ATGCAAATTTTCGTTAAGACGTTGACAGGCAAGACTATAACTCTCGAAGTTGAGGCATCG 1346
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || | ||||| |||||||||||||| ||||| |||||||| || ||
Sbjct 1345 GATACGATTGAAAACGTCAAAGCCAAAATTCAAGACAAAGAGGGGATTCCACCAGACCAG 1286
Query 22339 CAACGTCT--TATATTTGCC 22356
|| ||||| | | ||||||
Sbjct 1285 CAGCGTCTGGTTTGTTTGCC 1266
>seq22378
Length=3416
Score = 123 bits (136), Expect = 2e-23
Identities = 104/128 (81%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||||||||| |||||||| || |||||||| ||||||||||||||||| || |
Sbjct 1933 ATGCAAATTTTTGTCAAAACTTTGACTGGTAAAACTATCACTCTTGAAGTGGAAGCCTCG 1874
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || | | ||| |||||||| ||||| |||||||||||||| |||||
Sbjct 1873 GATACTATTGAGAACGTGAAAGCTAAAATTCAGGACAAAGAGGGTATTCCACCTGATCAG 1814
Query 22339 CAACGTCT 22346
|| |||||
Sbjct 1813 CAGCGTCT 1806
Score = 84.2 bits (92), Expect = 2e-11
Identities = 103/140 (74%), Gaps = 2/140 (1%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||| ||||| || || || || || || | ||||| ||||| || | |
Sbjct 1666 ATGCAAATTTTCGTTAAGACGTTGACAGGCAAGACTATAACTCTCGAAGTTGAGGCATCG 1607
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || | ||||| |||||||||||||| ||||| |||||||| || ||
Sbjct 1606 GATACGATTGAAAACGTCAAAGCCAAAATTCAAGACAAAGAGGGGATTCCACCAGACCAG 1547
Query 22339 CAACGTCT--TATATTTGCC 22356
|| ||||| | | ||||||
Sbjct 1546 CAGCGTCTGGTTTGTTTGCC 1527
>seq567
Length=28520
Score = 100 bits (110), Expect = 2e-16
Identities = 99/128 (77%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||||||||| || | || || || || | ||||| ||||||||| || |
Sbjct 6793 ATGCAAATTTTTGTTAAGACACTTACGGGAAAGACTATTACTCTGGAAGTGGAAGCCTCG 6852
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | ||| || ||||| |||||||||||||||||||| |||||
Sbjct 6853 GATACTATTGAGAATGTGAAAGCTAAGATTCAGGACAAGGAGGGTATTCCACCTGATCAG 6912
Query 22339 CAACGTCT 22346
|| |||||
Sbjct 6913 CAGCGTCT 6920
Score = 82.4 bits (90), Expect = 6e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || ||||| |||||| | || || || || | ||||||||||| || | |
Sbjct 7329 ATGCAGATCTTTGTCAAAACTCTGACTGGAAAGACTATAACTCTTGAAGTTGAGGCATCT 7388
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | || || |||| |||||||||||||||||||| |||||||| |||||
Sbjct 7389 GACACGATTGAAAATGTCAAGGCCAAAATTCAAGACAAGGAGGGCATTCCACCAGATCAG 7448
Query 22339 CAACG 22343
|| ||
Sbjct 7449 CAGCG 7453
>seq8275
Length=9039
Score = 95.1 bits (104), Expect = 1e-14
Identities = 99/130 (76%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274
|| |||||| |||||||| |||||||||||||| || || | || |||||||| || |
Sbjct 3962 AAGGATGCAGATTTTTGTCAAAACTTTAACCGGAAAGACTATTACGCTTGAAGTTGAGGC 4021
Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334
|||| || | || || | || || |||||||| |||||||| |||||||| ||
Sbjct 4022 ATCCGACACGATTGAAAATGTTAAGGCCAAGATTCAAGATAAGGAGGGCATTCCACCGGA 4081
Query 22335 TCAACAACGT 22344
|||||| |||
Sbjct 4082 TCAACAGCGT 4091
>seq18458
Length=4373
Score = 91.5 bits (100), Expect = 1e-13
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| ||||| || |||||||| || || || ||||||||||||| || | |
Sbjct 4172 ATGCAAATCTTTGTCAAGACTTTAACTGGAAAGACTATCACTCTTGAAGTTGAGGCATCT 4113
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | || || |||| |||||||||||||||||||| ||||| || |||||
Sbjct 4112 GACACGATTGAAAATGTCAAGGCCAAAATTCAAGACAAGGAGGGGATTCCGCCAGATCAG 4053
Query 22339 CAACG 22343
|| ||
Sbjct 4052 CAGCG 4048
>seq15966
Length=5121
Score = 87.8 bits (96), Expect = 2e-12
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273
|||| ||||| |||||||| || ||| | ||||| ||||| | ||||| || || ||
Sbjct 800 TAAATATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAGG 859
Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333
| | |||||| | || || | || |||||||||||| || |||||||| || || |
Sbjct 860 CTTCTGATACCATTGAGAATGTTAAGGCAAAAATTCAAGATAAAGAGGGTATCCCGCCTG 919
Query 22334 ATCAACAACGT 22344
||||||| |||
Sbjct 920 ATCAACAGCGT 930
>seq9420
Length=8200
Score = 87.8 bits (96), Expect = 2e-12
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273
|||| ||||| |||||||| || ||| | ||||| ||||| | ||||| || || ||
Sbjct 7285 TAAATATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAGG 7226
Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333
| | |||||| | || || | || |||||||||||| || |||||||| || || |
Sbjct 7225 CTTCTGATACCATTGAGAATGTTAAGGCAAAAATTCAAGATAAAGAGGGTATCCCGCCTG 7166
Query 22334 ATCAACAACGT 22344
||||||| |||
Sbjct 7165 ATCAACAGCGT 7155
>seq5142
Length=12213
Score = 87.8 bits (96), Expect = 2e-12
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|| ||||| || || || || ||| | || || |||||| ||||||||||||| || |
Sbjct 7572 AATATGCAGATCTTCGTCAAGACTCTTACTGGAAAAACGATCACTCTTGAAGTCGAGGCT 7513
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
| |||||| | || || | || |||||||||||||||||| || ||||| || |||
Sbjct 7512 TCTGATACCATCGAAAATGTGAAGGCAAAAATTCAAGACAAGGAAGGCATTCCTCCTGAT 7453
Query 22336 CAACAACG 22343
|| || ||
Sbjct 7452 CAGCAGCG 7445
>seq2634
Length=16880
Score = 87.8 bits (96), Expect = 2e-12
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|| ||||| || || || || ||| | || || |||||| ||||||||||||| || |
Sbjct 2032 AATATGCAGATCTTCGTCAAGACTCTTACTGGAAAAACGATCACTCTTGAAGTCGAGGCT 1973
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
| |||||| | || || | || |||||||||||||||||| || ||||| || |||
Sbjct 1972 TCTGATACCATCGAAAATGTGAAGGCAAAAATTCAAGACAAGGAAGGCATTCCTCCTGAT 1913
Query 22336 CAACAACG 22343
|| || ||
Sbjct 1912 CAGCAGCG 1905
>seq1871
Length=19151
Score = 87.8 bits (96), Expect = 2e-12
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273
|||| ||||| |||||||| || ||| | ||||| ||||| | ||||| || || ||
Sbjct 11463 TAAATATGCAGATTTTTGTAAAGACTCTCACCGGAAAAACTATTACTCTCGAGGTTGAGG 11522
Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333
| | |||||| | || || | || |||||||||||| || |||||||| || || |
Sbjct 11523 CTTCTGATACCATTGAGAATGTTAAGGCAAAAATTCAAGATAAAGAGGGTATCCCGCCTG 11582
Query 22334 ATCAACAACGT 22344
||||||| |||
Sbjct 11583 ATCAACAGCGT 11593
>seq695
Length=26773
Score = 87.8 bits (96), Expect = 2e-12
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|| ||||| || || || || ||| | || || |||||| ||||||||||||| || |
Sbjct 12054 AATATGCAGATCTTCGTAAAGACTCTTACTGGAAAAACGATCACTCTTGAAGTCGAGGCT 12113
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
| |||||| | || || | || |||||||||||||||||| || ||||| || |||
Sbjct 12114 TCTGATACCATCGAAAATGTGAAGGCAAAAATTCAAGACAAGGAAGGCATTCCTCCTGAT 12173
Query 22336 CAACAACG 22343
|| || ||
Sbjct 12174 CAGCAGCG 12181
>seq20812
Length=3765
Score = 86.0 bits (94), Expect = 5e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 129400 GCCAATTCGCAACTCGCTTCCAATGCGCCAAAATAAATTGTTTCGGCAATTTTGGTGTTC 129459
||||| |||||| ||||||||||| ||| |||| |||||||| ||||| ||||
Sbjct 2196 GCCAACTCGCAAGAAGCTTCCAATGCACCATAATATATTGTTTCAAAAATTTGTTTGTTT 2255
Query 129460 AACACTTTGGCCTGGTCGCTTTCGTACGGCATACGCAACATGGCAAATGTGTCGGCCAAA 129519
||| |||||||||||||||| | | || | ||||| || ||| | |||||||||
Sbjct 2256 AACTCTTTGGCCTGGTCGCTAACAAAAGGAAAACGCATCAAAATAAAAGCATCGGCCAAA 2315
Query 129520 CC 129521
||
Sbjct 2316 CC 2317
>seq5333
Length=11984
Score = 86.0 bits (94), Expect = 5e-12
Identities = 97/130 (75%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274
|| |||||| |||||||| ||||||||||| || || || | || |||||||| || |
Sbjct 8042 AAGGATGCAGATTTTTGTCAAAACTTTAACTGGAAAGACTATTACGCTTGAAGTTGAGGC 8101
Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334
|||| || | || || | || || |||||||| |||||||| ||||| || ||
Sbjct 8102 ATCCGACACGATTGAAAATGTTAAGGCCAAGATTCAAGATAAGGAGGGCATTCCGCCGGA 8161
Query 22335 TCAACAACGT 22344
|||||| |||
Sbjct 8162 TCAACAGCGT 8171
>seq18228
Length=4442
Score = 82.4 bits (90), Expect = 6e-11
Identities = 96/130 (74%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274
|| |||||| |||||||| || ||||||||||| || || | || |||||||| || |
Sbjct 2960 AAGGATGCAGATTTTTGTCAAGACTTTAACCGGAAAGACTATTACGCTTGAAGTTGAGGC 3019
Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334
| || || | || || | || || |||||||| |||||||| ||||| || ||
Sbjct 3020 GTCTGACACGATTGAAAATGTTAAGGCCAAGATTCAAGATAAGGAGGGCATTCCGCCGGA 3079
Query 22335 TCAACAACGT 22344
|||||| |||
Sbjct 3080 TCAACAGCGT 3089
>seq12969
Length=6291
Score = 82.4 bits (90), Expect = 6e-11
Identities = 96/130 (74%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274
|| |||||| |||||||| || ||||||||||| || || | || |||||||| || |
Sbjct 1491 AAGGATGCAGATTTTTGTCAAGACTTTAACCGGAAAGACTATTACGCTTGAAGTTGAGGC 1432
Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334
| || || | || || | || || |||||||| |||||||| ||||| || ||
Sbjct 1431 GTCTGACACGATTGAAAATGTTAAGGCCAAGATTCAAGATAAGGAGGGCATTCCGCCGGA 1372
Query 22335 TCAACAACGT 22344
|||||| |||
Sbjct 1371 TCAACAGCGT 1362
>seq5365
Length=11941
Score = 82.4 bits (90), Expect = 6e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || ||||| |||||| | || || || || | ||||||||||| || | |
Sbjct 283 ATGCAGATCTTTGTCAAAACTCTGACTGGAAAGACTATAACTCTTGAAGTTGAGGCATCT 342
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | || || |||| |||||||||||||||||||| |||||||| |||||
Sbjct 343 GACACGATTGAAAATGTCAAGGCCAAAATTCAAGACAAGGAGGGCATTCCACCAGATCAG 402
Query 22339 CAACG 22343
|| ||
Sbjct 403 CAGCG 407
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419567677151665
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |