Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29]
31,341 sequences; 235,798,407 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq6556 105 1e-17
seq1266 105 1e-17
seq20751 104 5e-17
seq2049 93.3 9e-14
>seq6556
Length=10579
Score = 105 bits (116), Expect = 1e-17
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||
Sbjct 8104 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAG 8045
Query 142563 CCCCACATCGGGC 142575
|||| ||||||||
Sbjct 8044 CCCCGCATCGGGC 8032
Score = 104 bits (114), Expect = 5e-17
Identities = 68/75 (91%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||||||||||||||||||||||| | ||||||||||||| || |||| ||||||||||
Sbjct 5987 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 6046
Query 142564 CCCACATCGGGCAGA 142578
||| |||||||| ||
Sbjct 6047 CCCGCATCGGGCTGA 6061
>seq1266
Length=22135
Score = 105 bits (116), Expect = 1e-17
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||
Sbjct 17854 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAG 17913
Query 142563 CCCCACATCGGGC 142575
|||| ||||||||
Sbjct 17914 CCCCGCATCGGGC 17926
Score = 104 bits (114), Expect = 5e-17
Identities = 68/75 (91%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||||||||||||||||||||||| | ||||||||||||| || |||| ||||||||||
Sbjct 20438 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 20379
Query 142564 CCCACATCGGGCAGA 142578
||| |||||||| ||
Sbjct 20378 CCCGCATCGGGCTGA 20364
>seq20751
Length=3780
Score = 104 bits (114), Expect = 5e-17
Identities = 68/75 (91%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||||||||||||||||||||||| | ||||||||||||| || |||| ||||||||||
Sbjct 1245 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 1186
Query 142564 CCCACATCGGGCAGA 142578
||| |||||||| ||
Sbjct 1185 CCCGCATCGGGCTGA 1171
>seq2049
Length=18594
Score = 93.3 bits (102), Expect = 9e-14
Identities = 69/81 (85%), Gaps = 5/81 (6%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTC-----TTAATCTAGTGGTCGTGGGT 142557
|||||||||||||||||||||||||| | |||||| ||||||| || |||| ||||
Sbjct 17771 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCGGGGGTTAATCTGGTTGTCGCGGGT 17830
Query 142558 TCGAGCCCCACATCGGGCAGA 142578
||||||||| |||||||| ||
Sbjct 17831 TCGAGCCCCGCATCGGGCTGA 17851
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027424065387781
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |