Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq6556 105 1e-17 seq1266 105 1e-17 seq20751 104 5e-17 seq2049 93.3 9e-14 >seq6556 Length=10579 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| || |||| ||||||||| Sbjct 8104 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAG 8045 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 8044 CCCCGCATCGGGC 8032 Score = 104 bits (114), Expect = 5e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 5987 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 6046 Query 142564 CCCACATCGGGCAGA 142578 ||| |||||||| || Sbjct 6047 CCCGCATCGGGCTGA 6061 >seq1266 Length=22135 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| || |||| ||||||||| Sbjct 17854 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAG 17913 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 17914 CCCCGCATCGGGC 17926 Score = 104 bits (114), Expect = 5e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 20438 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 20379 Query 142564 CCCACATCGGGCAGA 142578 ||| |||||||| || Sbjct 20378 CCCGCATCGGGCTGA 20364 >seq20751 Length=3780 Score = 104 bits (114), Expect = 5e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 1245 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 1186 Query 142564 CCCACATCGGGCAGA 142578 ||| |||||||| || Sbjct 1185 CCCGCATCGGGCTGA 1171 >seq2049 Length=18594 Score = 93.3 bits (102), Expect = 9e-14 Identities = 69/81 (85%), Gaps = 5/81 (6%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTC-----TTAATCTAGTGGTCGTGGGT 142557 |||||||||||||||||||||||||| | |||||| ||||||| || |||| |||| Sbjct 17771 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCGGGGGTTAATCTGGTTGTCGCGGGT 17830 Query 142558 TCGAGCCCCACATCGGGCAGA 142578 ||||||||| |||||||| || Sbjct 17831 TCGAGCCCCGCATCGGGCTGA 17851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027424065387781