Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq10902 100 7e-16 seq22378 95.1 3e-14 seq8650 91.5 3e-13 seq7966 91.5 3e-13 seq27424 84.2 5e-11 >seq10902 Length=7311 Score = 100 bits (110), Expect = 7e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 288289 TGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGA 288348 || ||||| |||||||| | ||| || || || || |||||||| ||||||||||| ||| Sbjct 5982 TGAATATTGTAGTCGGCCAACGTACGACCATCCTCCAATTGTTTCCCTGCGAAGATTAGA 5923 Query 288349 CGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATA 288408 || || || ||||| || || || |||||||| || || || || ||||| || Sbjct 5922 CGTTGCTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATG 5863 Query 288409 GAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATC 288468 | || | || || || | |||||||||||||| || || || ||||| || | Sbjct 5862 GTGTCCGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACT 5803 Query 288469 TGCAT 288473 ||||| Sbjct 5802 TGCAT 5798 >seq22378 Length=3416 Score = 95.1 bits (104), Expect = 3e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 288345 CAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTC 288404 ||||||||| ||| | ||| || || ||||| ||||| ||||| ||||||||||| || Sbjct 1805 CAGACGCTGCTGATCAGGTGGAATACCCTCTTTGTCCTGAATTTTAGCTTTCACGTTCTC 1864 Query 288405 TATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 |||| ||| | ||| ||||| || ||||| || || || |||| ||| ||||| || Sbjct 1865 AATAGTATCCGAGGCTTCCACTTCAAGAGTGATAGTTTTACCAGTCAAAGTTTTGACAAA 1924 Query 288465 TATCTGCATT 288474 || |||||| Sbjct 1925 AATTTGCATT 1934 >seq8650 Length=8768 Score = 91.5 bits (100), Expect = 3e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 288289 TGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGA 288348 || ||||| ||||| || | ||| || || || || ||||| || ||||||||||| ||| Sbjct 4690 TGAATATTGTAGTCTGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGA 4631 Query 288349 CGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATA 288408 || || || ||||| || || || |||||||| || || || || ||||| || Sbjct 4630 CGTTGCTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATG 4571 Query 288409 GAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATC 288468 | || | || || || | |||||||||||||| || || || ||||| || | Sbjct 4570 GTGTCCGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACT 4511 Query 288469 TGCAT 288473 ||||| Sbjct 4510 TGCAT 4506 >seq7966 Length=9287 Score = 91.5 bits (100), Expect = 3e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 288289 TGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGA 288348 || ||||| ||||| || | ||| || || || || ||||| || ||||||||||| ||| Sbjct 5153 TGAATATTGTAGTCAGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGA 5212 Query 288349 CGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATA 288408 || || || ||||| || || || |||||||| || || || || ||||| || Sbjct 5213 CGTTGCTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATG 5272 Query 288409 GAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATC 288468 | || | || || || | |||||||||||||| || || || ||||| || | Sbjct 5273 GTGTCCGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACT 5332 Query 288469 TGCAT 288473 ||||| Sbjct 5333 TGCAT 5337 >seq27424 Length=2520 Score = 84.2 bits (92), Expect = 5e-11 Identities = 133/190 (70%), Gaps = 8/190 (4%) Strand=Plus/Plus Query 288289 TGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGA 288348 || ||||| ||||||| | ||| || || || || ||||| || ||||||||||| ||| Sbjct 367 TGAATATTGTAGTCGGATAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGA 426 Query 288349 CGCTGTTGAGAATC-----TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403 || || || || ||||| || || || |||||||| || || || || |||| Sbjct 427 CGTTGCTG---CTCCCGGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTT 483 Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 | || | || | || || || | |||||||||||||| || || || ||||| | Sbjct 484 CGATGGTGTCCGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAA 543 Query 288464 ATATCTGCAT 288473 | | ||||| Sbjct 544 AGACTTGCAT 553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179180702034198