Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29]
31,341 sequences; 235,798,407 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq10902 100 7e-16
seq22378 95.1 3e-14
seq8650 91.5 3e-13
seq7966 91.5 3e-13
seq27424 84.2 5e-11
>seq10902
Length=7311
Score = 100 bits (110), Expect = 7e-16
Identities = 133/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 288289 TGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGA 288348
|| ||||| |||||||| | ||| || || || || |||||||| ||||||||||| |||
Sbjct 5982 TGAATATTGTAGTCGGCCAACGTACGACCATCCTCCAATTGTTTCCCTGCGAAGATTAGA 5923
Query 288349 CGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATA 288408
|| || || ||||| || || || |||||||| || || || || ||||| ||
Sbjct 5922 CGTTGCTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATG 5863
Query 288409 GAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATC 288468
| || | || || || | |||||||||||||| || || || ||||| || |
Sbjct 5862 GTGTCCGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACT 5803
Query 288469 TGCAT 288473
|||||
Sbjct 5802 TGCAT 5798
>seq22378
Length=3416
Score = 95.1 bits (104), Expect = 3e-14
Identities = 99/130 (76%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 288345 CAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTC 288404
||||||||| ||| | ||| || || ||||| ||||| ||||| ||||||||||| ||
Sbjct 1805 CAGACGCTGCTGATCAGGTGGAATACCCTCTTTGTCCTGAATTTTAGCTTTCACGTTCTC 1864
Query 288405 TATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464
|||| ||| | ||| ||||| || ||||| || || || |||| ||| ||||| ||
Sbjct 1865 AATAGTATCCGAGGCTTCCACTTCAAGAGTGATAGTTTTACCAGTCAAAGTTTTGACAAA 1924
Query 288465 TATCTGCATT 288474
|| ||||||
Sbjct 1925 AATTTGCATT 1934
>seq8650
Length=8768
Score = 91.5 bits (100), Expect = 3e-13
Identities = 131/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 288289 TGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGA 288348
|| ||||| ||||| || | ||| || || || || ||||| || ||||||||||| |||
Sbjct 4690 TGAATATTGTAGTCTGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGA 4631
Query 288349 CGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATA 288408
|| || || ||||| || || || |||||||| || || || || ||||| ||
Sbjct 4630 CGTTGCTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATG 4571
Query 288409 GAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATC 288468
| || | || || || | |||||||||||||| || || || ||||| || |
Sbjct 4570 GTGTCCGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACT 4511
Query 288469 TGCAT 288473
|||||
Sbjct 4510 TGCAT 4506
>seq7966
Length=9287
Score = 91.5 bits (100), Expect = 3e-13
Identities = 131/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 288289 TGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGA 288348
|| ||||| ||||| || | ||| || || || || ||||| || ||||||||||| |||
Sbjct 5153 TGAATATTGTAGTCAGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGA 5212
Query 288349 CGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATA 288408
|| || || ||||| || || || |||||||| || || || || ||||| ||
Sbjct 5213 CGTTGCTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATG 5272
Query 288409 GAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATC 288468
| || | || || || | |||||||||||||| || || || ||||| || |
Sbjct 5273 GTGTCCGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACT 5332
Query 288469 TGCAT 288473
|||||
Sbjct 5333 TGCAT 5337
>seq27424
Length=2520
Score = 84.2 bits (92), Expect = 5e-11
Identities = 133/190 (70%), Gaps = 8/190 (4%)
Strand=Plus/Plus
Query 288289 TGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGA 288348
|| ||||| ||||||| | ||| || || || || ||||| || ||||||||||| |||
Sbjct 367 TGAATATTGTAGTCGGATAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGA 426
Query 288349 CGCTGTTGAGAATC-----TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403
|| || || || ||||| || || || |||||||| || || || || ||||
Sbjct 427 CGTTGCTG---CTCCCGGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTT 483
Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463
| || | || | || || || | |||||||||||||| || || || ||||| |
Sbjct 484 CGATGGTGTCCGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAA 543
Query 288464 ATATCTGCAT 288473
| | |||||
Sbjct 544 AGACTTGCAT 553
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179180702034198
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |