Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29]
31,341 sequences; 235,798,407 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq22378 87.8 2e-12
seq3965 87.8 2e-12
seq567 87.8 2e-12
>seq22378
Length=3416
Score = 87.8 bits (96), Expect = 2e-12
Identities = 99/130 (76%), Gaps = 2/130 (2%)
Strand=Plus/Plus
Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTC 64374
|| ||||||||||| || ||||| || ||||| ||||| ||||| ||||| || ||
Sbjct 1539 AGACGCTGCTGGTCTGGTGGAATCCCCTCTTTGTCTTGAATTTTG-GCTTTGACGTTTTC 1597
Query 64375 CACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAA 64434
| ||||| || || ||||| | ||||| |||||||| ||||| || || |||||
Sbjct 1598 AATCGTATCCGATGCCTCAACTTCGAGAGTTATAGTCTTGCCTGTCAACGTCTTAACGAA 1657
Query 64435 AATTTGCAtt 64444
||||||||||
Sbjct 1658 AATTTGCATT 1667
Score = 84.2 bits (92), Expect = 2e-11
Identities = 98/130 (75%), Gaps = 2/130 (2%)
Strand=Plus/Plus
Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTC 64374
|| |||||||| || || ||||| || ||||| || || ||||| ||||| || |||
Sbjct 1806 AGACGCTGCTGATCAGGTGGAATACCCTCTTTGTCCTGAATTTTA-GCTTTCACGTTCTC 1864
Query 64375 CACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAA 64434
| ||||| ||| |||||||| | ||| | || || || ||||||||||| || ||
Sbjct 1865 AATAGTATCCGAGGCTTCCACTTCAAGAGTGATAGTTTTACCAGTCAAAGTTTTGACAAA 1924
Query 64435 AATTTGCAtt 64444
||||||||||
Sbjct 1925 AATTTGCATT 1934
>seq3965
Length=13966
Score = 87.8 bits (96), Expect = 2e-12
Identities = 99/130 (76%), Gaps = 2/130 (2%)
Strand=Plus/Plus
Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTC 64374
|| ||||||||||| || ||||| || ||||| ||||| ||||| ||||| || ||
Sbjct 1278 AGACGCTGCTGGTCTGGTGGAATCCCCTCTTTGTCTTGAATTTTG-GCTTTGACGTTTTC 1336
Query 64375 CACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAA 64434
| ||||| || || ||||| | ||||| |||||||| ||||| || || |||||
Sbjct 1337 AATCGTATCCGATGCCTCAACTTCGAGAGTTATAGTCTTGCCTGTCAACGTCTTAACGAA 1396
Query 64435 AATTTGCAtt 64444
||||||||||
Sbjct 1397 AATTTGCATT 1406
Score = 87.8 bits (96), Expect = 2e-12
Identities = 99/130 (76%), Gaps = 2/130 (2%)
Strand=Plus/Plus
Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTC 64374
|| |||||||| || || ||||| || ||||| || || ||||| ||||| ||| |||
Sbjct 1546 AGACGCTGCTGATCAGGTGGAATACCCTCTTTGTCCTGAATTTTA-GCTTTCACATTCTC 1604
Query 64375 CACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAA 64434
| ||||| ||| |||||||| | ||| | || || || ||||||||||| || ||
Sbjct 1605 AATAGTATCCGAGGCTTCCACTTCAAGAGTGATAGTTTTACCAGTCAAAGTTTTGACAAA 1664
Query 64435 AATTTGCAtt 64444
||||||||||
Sbjct 1665 AATTTGCATT 1674
>seq567
Length=28520
Score = 87.8 bits (96), Expect = 2e-12
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 64319 CGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACT 64378
||||||||||| || || || ||||| || ||||| ||||| ||| ||| || | |
Sbjct 6640 CGCTGCTGGTCCGGCGGGATACCTTCCTTGTCTTGAATTTTGGCCTTAACATTTTCAATT 6581
Query 64379 GTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATT 64438
|| ||| ||| || ||||| | ||| | |||||| || ||||| || |||||||| ||
Sbjct 6580 GTGTCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTCTTTACGAAGATC 6521
Query 64439 TGCAtttt 64446
||||| ||
Sbjct 6520 TGCATATT 6513
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499449057904040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |