Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq22378 87.8 2e-12 seq3965 87.8 2e-12 seq567 87.8 2e-12 >seq22378 Length=3416 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTC 64374 || ||||||||||| || ||||| || ||||| ||||| ||||| ||||| || || Sbjct 1539 AGACGCTGCTGGTCTGGTGGAATCCCCTCTTTGTCTTGAATTTTG-GCTTTGACGTTTTC 1597 Query 64375 CACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAA 64434 | ||||| || || ||||| | ||||| |||||||| ||||| || || ||||| Sbjct 1598 AATCGTATCCGATGCCTCAACTTCGAGAGTTATAGTCTTGCCTGTCAACGTCTTAACGAA 1657 Query 64435 AATTTGCAtt 64444 |||||||||| Sbjct 1658 AATTTGCATT 1667 Score = 84.2 bits (92), Expect = 2e-11 Identities = 98/130 (75%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTC 64374 || |||||||| || || ||||| || ||||| || || ||||| ||||| || ||| Sbjct 1806 AGACGCTGCTGATCAGGTGGAATACCCTCTTTGTCCTGAATTTTA-GCTTTCACGTTCTC 1864 Query 64375 CACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAA 64434 | ||||| ||| |||||||| | ||| | || || || ||||||||||| || || Sbjct 1865 AATAGTATCCGAGGCTTCCACTTCAAGAGTGATAGTTTTACCAGTCAAAGTTTTGACAAA 1924 Query 64435 AATTTGCAtt 64444 |||||||||| Sbjct 1925 AATTTGCATT 1934 >seq3965 Length=13966 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTC 64374 || ||||||||||| || ||||| || ||||| ||||| ||||| ||||| || || Sbjct 1278 AGACGCTGCTGGTCTGGTGGAATCCCCTCTTTGTCTTGAATTTTG-GCTTTGACGTTTTC 1336 Query 64375 CACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAA 64434 | ||||| || || ||||| | ||||| |||||||| ||||| || || ||||| Sbjct 1337 AATCGTATCCGATGCCTCAACTTCGAGAGTTATAGTCTTGCCTGTCAACGTCTTAACGAA 1396 Query 64435 AATTTGCAtt 64444 |||||||||| Sbjct 1397 AATTTGCATT 1406 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTC 64374 || |||||||| || || ||||| || ||||| || || ||||| ||||| ||| ||| Sbjct 1546 AGACGCTGCTGATCAGGTGGAATACCCTCTTTGTCCTGAATTTTA-GCTTTCACATTCTC 1604 Query 64375 CACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAA 64434 | ||||| ||| |||||||| | ||| | || || || ||||||||||| || || Sbjct 1605 AATAGTATCCGAGGCTTCCACTTCAAGAGTGATAGTTTTACCAGTCAAAGTTTTGACAAA 1664 Query 64435 AATTTGCAtt 64444 |||||||||| Sbjct 1665 AATTTGCATT 1674 >seq567 Length=28520 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 64319 CGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACT 64378 ||||||||||| || || || ||||| || ||||| ||||| ||| ||| || | | Sbjct 6640 CGCTGCTGGTCCGGCGGGATACCTTCCTTGTCTTGAATTTTGGCCTTAACATTTTCAATT 6581 Query 64379 GTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATT 64438 || ||| ||| || ||||| | ||| | |||||| || ||||| || |||||||| || Sbjct 6580 GTGTCAGAGGCTTCAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTCTTTACGAAGATC 6521 Query 64439 TGCAtttt 64446 ||||| || Sbjct 6520 TGCATATT 6513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499449057904040