Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq3049 82.4 8e-11 seq2786 82.4 8e-11 >seq3049 Length=15854 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 52755 AACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTT 52814 || ||||| ||||| ||||| |||||| | |||||||| |||| || |||||||||||| Sbjct 13247 AAAGCTCGAAATCCTTTTGATTTTATGGAGAACATTTCTATTGAAGGGAAGACCAACTTT 13188 Query 52815 TTCGAGAAGCGAGTC 52829 ||||||||| |||| Sbjct 13187 TTCGAGAAGAAAGTC 13173 >seq2786 Length=16508 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 52755 AACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTT 52814 || ||||| ||||| ||||| |||||| | |||||||| |||| || |||||||||||| Sbjct 3643 AAAGCTCGAAATCCTTTTGATTTTATGGAGAACATTTCTATTGAAGGGAAGACCAACTTT 3584 Query 52815 TTCGAGAAGCGAGTC 52829 ||||||||| |||| Sbjct 3583 TTCGAGAAGAAAGTC 3569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496067983001520