Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq10902 109 5e-19 seq19449 100 3e-16 seq8650 100 3e-16 seq7966 100 3e-16 seq695 96.9 3e-15 seq5142 93.3 4e-14 seq2634 93.3 4e-14 seq27424 91.5 1e-13 >seq10902 Length=7311 Score = 109 bits (120), Expect = 5e-19 Identities = 139/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 126929 TGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAAT 126988 ||||||||||| ||| ||| ||| ||| ||| || | ||||| || ||| |||| | Sbjct 5982 TGAATATTGTAGTCGGCCAACGTACGACCATCCTCCAATTGTTTCCCTGCGAAGATTAGA 5923 Query 126989 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACG 127048 || ||||| || || || || |||||||| ||| ||| || ||||| | ||||| | Sbjct 5922 CGTTGCTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATG 5863 Query 127049 GTGTCCGTACT-CTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAAT 127107 ||||||| ||| ||| || || | ||| | ||| || || || || ||||| ||||| | Sbjct 5862 GTGTCCG-ACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGAC 5804 Query 127108 CTGCATGGC 127116 |||||||| Sbjct 5803 TTGCATGGC 5795 >seq19449 Length=4096 Score = 100 bits (110), Expect = 3e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 126929 TGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAAT 126988 ||||||||||| || ||| ||| ||| ||| || | ||| || || ||| |||| | Sbjct 1025 TGAATATTGTAGTCAGCCAACGTACGACCATCCTCCAACTGCTTCCCTGCGAAGATGAGA 966 Query 126989 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACG 127048 || ||||| || || || || |||||||| ||| ||| || ||||| | |||| | Sbjct 965 CGTTGCTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTCTCGATG 906 Query 127049 GTGTCCGTACT-CTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAAT 127107 ||||||| ||| ||| || || | ||| | ||| || || || || ||||| ||||| | Sbjct 905 GTGTCCG-ACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGAC 847 Query 127108 CTGCATGGC 127116 |||||||| Sbjct 846 TTGCATGGC 838 >seq8650 Length=8768 Score = 100 bits (110), Expect = 3e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 126929 TGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAAT 126988 ||||||||||| || ||| ||| ||| ||| || | || || || ||| |||| | Sbjct 4690 TGAATATTGTAGTCTGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGA 4631 Query 126989 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACG 127048 || ||||| || || || || |||||||| ||| ||| || ||||| | ||||| | Sbjct 4630 CGTTGCTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATG 4571 Query 127049 GTGTCCGTACT-CTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAAT 127107 ||||||| ||| ||| || || | ||| | ||| || || || || ||||| ||||| | Sbjct 4570 GTGTCCG-ACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGAC 4512 Query 127108 CTGCATGGC 127116 |||||||| Sbjct 4511 TTGCATGGC 4503 >seq7966 Length=9287 Score = 100 bits (110), Expect = 3e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 126929 TGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAAT 126988 ||||||||||| || ||| ||| ||| ||| || | || || || ||| |||| | Sbjct 5153 TGAATATTGTAGTCAGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGA 5212 Query 126989 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACG 127048 || ||||| || || || || |||||||| ||| ||| || ||||| | ||||| | Sbjct 5213 CGTTGCTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATG 5272 Query 127049 GTGTCCGTACT-CTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAAT 127107 ||||||| ||| ||| || || | ||| | ||| || || || || ||||| ||||| | Sbjct 5273 GTGTCCG-ACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGAC 5331 Query 127108 CTGCATGGC 127116 |||||||| Sbjct 5332 TTGCATGGC 5340 >seq695 Length=26773 Score = 96.9 bits (106), Expect = 3e-15 Identities = 101/130 (78%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 126985 CAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTT 127043 ||||||||||||||| ||||| ||||| ||||||| | ||| ||| || ||| | | || Sbjct 12185 CAATCGCTGCTGATCAGGAGGAATGCCTTCCTTGT-CTTGAATTTTTGCCTTCACATTTT 12127 Query 127044 CGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 127103 ||| ||| || | | ||||||||| | || | |||||| || || ||||| ||||| | Sbjct 12126 CGATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTTACGA 12067 Query 127104 AAATCTGCAT 127113 | |||||||| Sbjct 12066 AGATCTGCAT 12057 >seq5142 Length=12213 Score = 93.3 bits (102), Expect = 4e-14 Identities = 100/130 (77%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 126985 CAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTT 127043 ||||||||||||||| ||||| ||||| ||||||| | ||| ||| || ||| | | || Sbjct 7441 CAATCGCTGCTGATCAGGAGGAATGCCTTCCTTGT-CTTGAATTTTTGCCTTCACATTTT 7499 Query 127044 CGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 127103 ||| ||| || | | ||||||||| | || | |||||| || || ||||| || || | Sbjct 7500 CGATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGA 7559 Query 127104 AAATCTGCAT 127113 | |||||||| Sbjct 7560 AGATCTGCAT 7569 >seq2634 Length=16880 Score = 93.3 bits (102), Expect = 4e-14 Identities = 100/130 (77%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 126985 CAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTT 127043 ||||||||||||||| ||||| ||||| ||||||| | ||| ||| || ||| | | || Sbjct 1901 CAATCGCTGCTGATCAGGAGGAATGCCTTCCTTGT-CTTGAATTTTTGCCTTCACATTTT 1959 Query 127044 CGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 127103 ||| ||| || | | ||||||||| | || | |||||| || || ||||| || || | Sbjct 1960 CGATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGA 2019 Query 127104 AAATCTGCAT 127113 | |||||||| Sbjct 2020 AGATCTGCAT 2029 >seq27424 Length=2520 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/191 (72%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 126929 TGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAAT 126988 ||||||||||| ||| | ||| ||| ||| || | || || || ||| |||| | Sbjct 367 TGAATATTGTAGTCGGATAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGA 426 Query 126989 CGCTGCTGAT--CGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGA 127046 || ||||| | |||| || || |||||||| ||| ||| || ||||| | ||||| Sbjct 427 CGTTGCTGCTCCCGGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGA 486 Query 127047 CGGTGTCCGTACT-CTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 |||||||| ||| ||| || || | ||| | ||| || || || || ||||| ||||| Sbjct 487 TGGTGTCCG-ACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAG 545 Query 127106 ATCTGCATGGC 127116 | |||||||| Sbjct 546 ACTTGCATGGC 556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475314516617840