Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq695 102 7e-17 seq15966 98.7 9e-16 seq9420 98.7 9e-16 seq5142 98.7 9e-16 seq2634 98.7 9e-16 seq1871 98.7 9e-16 seq490 93.3 4e-14 seq8275 91.5 1e-13 seq5333 91.5 1e-13 seq1624 89.7 5e-13 seq18228 86.0 6e-12 seq12969 86.0 6e-12 seq20812 84.2 2e-11 seq3965 84.2 2e-11 seq22378 82.4 7e-11 >seq695 Length=26773 Score = 102 bits (112), Expect = 7e-17 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 45212 CAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTC 45271 |||||| ||||| || || ||||||||||| || |||||||||||| || | ||| Sbjct 12185 CAATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTC 12126 Query 45272 TACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAA 45331 | ||| || |||| ||||||||| ||||| | |||||| || || ||||| ||||| || Sbjct 12125 GATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTTACGAA 12066 Query 45332 AATTTGCAT 45340 || ||||| Sbjct 12065 GATCTGCAT 12057 Score = 98.7 bits (108), Expect = 9e-16 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 45212 CAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTC 45271 |||||||||||| || |||||||| ||||| ||||||||||| || |||| ||| Sbjct 12456 CAATCGTTGCTGATCAGGCGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTC 12397 Query 45272 TACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAA 45331 | ||||| |||| ||| ||||||||||| | || || || || ||||| || || || Sbjct 12396 GATAGTGTCAGAAGCCTCAACTTCGAGAGTGATGGTCTTTCCAGTAAGAGTCTTAACGAA 12337 Query 45332 AATTTGCAT 45340 ||| ||||| Sbjct 12336 AATCTGCAT 12328 >seq15966 Length=5121 Score = 98.7 bits (108), Expect = 9e-16 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 45212 CAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTC 45271 ||| || || || || ||||| || || |||||||||||||||||| || | || Sbjct 933 CAAACGCTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTC 874 Query 45272 TACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAA 45331 | ||| || |||| ||| || |||||||||| ||||| ||||| ||||| |||||||| Sbjct 873 AATGGTATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAA 814 Query 45332 AATTTGCAT 45340 ||| ||||| Sbjct 813 AATCTGCAT 805 >seq9420 Length=8200 Score = 98.7 bits (108), Expect = 9e-16 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 45212 CAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTC 45271 ||| || || || || ||||| || || |||||||||||||||||| || | || Sbjct 7152 CAAACGCTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTC 7211 Query 45272 TACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAA 45331 | ||| || |||| ||| || |||||||||| ||||| ||||| ||||| |||||||| Sbjct 7212 AATGGTATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAA 7271 Query 45332 AATTTGCAT 45340 ||| ||||| Sbjct 7272 AATCTGCAT 7280 >seq5142 Length=12213 Score = 98.7 bits (108), Expect = 9e-16 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 45212 CAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTC 45271 |||||| ||||| || || ||||||||||| || |||||||||||| || | ||| Sbjct 7441 CAATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTC 7500 Query 45272 TACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAA 45331 | ||| || |||| ||||||||| ||||| | |||||| || || ||||| || || || Sbjct 7501 GATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAA 7560 Query 45332 AATTTGCAT 45340 || ||||| Sbjct 7561 GATCTGCAT 7569 Score = 89.7 bits (98), Expect = 5e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 45212 CAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTC 45271 |||||||||||| || || ||||| ||||| ||||||||||| || |||| ||| Sbjct 7170 CAATCGTTGCTGATCAGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTC 7229 Query 45272 TACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAA 45331 | ||||| |||| || |||||||| || | || || || || ||||| || ||||| Sbjct 7230 GATAGTGTCAGAAGCTTCAACTTCGAGTGTGATGGTCTTTCCAGTAAGAGTCTTAACAAA 7289 Query 45332 AATTTGCAT 45340 ||| ||||| Sbjct 7290 AATCTGCAT 7298 >seq2634 Length=16880 Score = 98.7 bits (108), Expect = 9e-16 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 45212 CAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTC 45271 |||||| ||||| || || ||||||||||| || |||||||||||| || | ||| Sbjct 1901 CAATCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTC 1960 Query 45272 TACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAA 45331 | ||| || |||| ||||||||| ||||| | |||||| || || ||||| || || || Sbjct 1961 GATGGTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAA 2020 Query 45332 AATTTGCAT 45340 || ||||| Sbjct 2021 GATCTGCAT 2029 Score = 89.7 bits (98), Expect = 5e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 45212 CAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTC 45271 |||||||||||| || || ||||| ||||| ||||||||||| || |||| ||| Sbjct 1630 CAATCGTTGCTGATCAGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTGACGTTTTC 1689 Query 45272 TACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAA 45331 | ||||| |||| || |||||||| || | || || || || ||||| || ||||| Sbjct 1690 GATAGTGTCAGAAGCTTCAACTTCGAGTGTGATGGTCTTTCCAGTAAGAGTCTTAACAAA 1749 Query 45332 AATTTGCAT 45340 ||| ||||| Sbjct 1750 AATCTGCAT 1758 >seq1871 Length=19151 Score = 98.7 bits (108), Expect = 9e-16 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 45212 CAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTC 45271 ||| || || || || ||||| || || |||||||||||||||||| || | || Sbjct 11596 CAAACGCTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTC 11537 Query 45272 TACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAA 45331 | ||| || |||| ||| || |||||||||| ||||| ||||| ||||| |||||||| Sbjct 11536 AATGGTATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAA 11477 Query 45332 AATTTGCAT 45340 ||| ||||| Sbjct 11476 AATCTGCAT 11468 >seq490 Length=29575 Score = 93.3 bits (102), Expect = 4e-14 Identities = 122/165 (74%), Gaps = 3/165 (2%) Strand=Plus/Minus Query 123600 CAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAAT 123659 ||| | ||||| |||| || || ||| |||||||||| || || || || ||| | || Sbjct 3355 CAAATAGAAACTGGAATTCCATATATGGTCTACAAAGATGCTTGTAATAGTAAATCAAAC 3296 Query 123660 CAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGC 123719 || | || ||||||||||| ||||| |||||||| | |||||| | ||||| | | Sbjct 3295 CAAAAAAATTTGGGAACAATTAAATGCTCAAATCTTTGTACTGAAATTGTTGAATATA-C 3237 Query 123720 GATGCC-GATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGT 123763 ||| || |||| | || |||||||||||||||| |||||| Sbjct 3236 TTCGCCTGAAGAAGTTTCTGTTTGTAATTTGGCTTCGA-TTGCGT 3193 Score = 89.7 bits (98), Expect = 5e-13 Identities = 121/165 (73%), Gaps = 3/165 (2%) Strand=Plus/Minus Query 123600 CAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAAT 123659 ||| | ||||| |||| || || ||| |||| ||||| || || || || ||| | || Sbjct 4896 CAAATAGAAACTGGAATTCCCTATATGGTCTATAAAGATGCTTGTAATAGTAAATCAAAC 4837 Query 123660 CAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGC 123719 || | || ||||||||||| ||||| |||||||| | |||||| | ||||| | | Sbjct 4836 CAAAAAAATTTGGGAACAATTAAATGCTCAAATCTTTGTACTGAAATTGTTGAATATA-C 4778 Query 123720 GATGCC-GATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGT 123763 ||| || |||| | || |||||||||||||||| |||||| Sbjct 4777 TTCGCCTGAAGAAGTTTCTGTTTGTAATTTGGCTTCGA-TTGCGT 4734 >seq8275 Length=9039 Score = 91.5 bits (100), Expect = 1e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 45212 CAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTC 45271 ||| || || || ||||| |||||||| || ||||||||||| || || | ||| Sbjct 4094 CAAACGCTGTTGATCCGGTGGAATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTTTC 4035 Query 45272 TACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAA 45331 | |||||||| | ||| ||||| || |||| || || ||||||| |||||| ||||| Sbjct 4034 AATCGTGTCGGATGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTTAAAGTTTTGACAAA 3975 Query 45332 AATTTGCATC 45341 ||| |||||| Sbjct 3974 AATCTGCATC 3965 >seq5333 Length=11984 Score = 91.5 bits (100), Expect = 1e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 45212 CAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTC 45271 ||| || || || |||||||||||||| || ||||||||||| || || | ||| Sbjct 8174 CAAACGCTGTTGATCCGGCGGAATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTTTC 8115 Query 45272 TACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAA 45331 | |||||||| | ||| ||||| || |||| || || || |||| |||||| ||||| Sbjct 8114 AATCGTGTCGGATGCCTCAACTTCAAGCGTAATAGTCTTTCCAGTTAAAGTTTTGACAAA 8055 Query 45332 AATTTGCATC 45341 ||| |||||| Sbjct 8054 AATCTGCATC 8045 >seq1624 Length=20192 Score = 89.7 bits (98), Expect = 5e-13 Identities = 119/164 (73%), Gaps = 1/164 (1%) Strand=Plus/Minus Query 123600 CAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAAT 123659 ||| | ||||| |||| || || ||| |||||||||| || || || || ||| | || Sbjct 14290 CAAATAGAAACTGGAATTCCATATATGGTCTACAAAGATGCTTGTAATAGTAAATCAAAC 14231 Query 123660 CAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGC 123719 || | || ||||||||||| ||||| |||||||| | |||||| | ||||| | Sbjct 14230 CAAAAAAATTTGGGAACAATTAAATGCTCAAATCTTTGTACTGAAATTGTTGAATATACT 14171 Query 123720 GATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGT 123763 | | || |||| | || || ||||||||||||| |||||| Sbjct 14170 TCTCCTGAAGAAGTTTCTGTTTGCAATTTGGCTTCGA-TTGCGT 14128 >seq18228 Length=4442 Score = 86.0 bits (94), Expect = 6e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 45212 CAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTC 45271 ||| || || || |||||||||||||| || ||||||||||| || || | ||| Sbjct 3092 CAAACGCTGTTGATCCGGCGGAATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTTTC 3033 Query 45272 TACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAA 45331 | ||||| || | ||| ||||| || |||| || || ||||||| ||| || ||||| Sbjct 3032 AATCGTGTCAGACGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTTAAAGTCTTGACAAA 2973 Query 45332 AATTTGCATC 45341 ||| |||||| Sbjct 2972 AATCTGCATC 2963 >seq12969 Length=6291 Score = 86.0 bits (94), Expect = 6e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 45212 CAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTC 45271 ||| || || || |||||||||||||| || ||||||||||| || || | ||| Sbjct 1359 CAAACGCTGTTGATCCGGCGGAATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTTTC 1418 Query 45272 TACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAA 45331 | ||||| || | ||| ||||| || |||| || || ||||||| ||| || ||||| Sbjct 1419 AATCGTGTCAGACGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTTAAAGTCTTGACAAA 1478 Query 45332 AATTTGCATC 45341 ||| |||||| Sbjct 1479 AATCTGCATC 1488 >seq20812 Length=3765 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/165 (73%), Gaps = 3/165 (2%) Strand=Plus/Minus Query 123600 CAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAAT 123659 ||| | ||||| |||| || || ||| ||| ||||| || || || || ||| | || Sbjct 3583 CAAATAGAAACTGGAATTCCCTATATGGTCTTTAAAGATGCTTGTAATAGTAAATCAAAC 3524 Query 123660 CAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGC 123719 || | || ||||||||||| ||||| |||||||| | |||||| | ||||| | | Sbjct 3523 CAAAAAAATTTGGGAACAATTAAATGCTCAAATCTTTGTACTGAAATTGTTGAATATA-C 3465 Query 123720 GATGCC-GATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGT 123763 ||| || |||| | || |||||||||||||||| |||||| Sbjct 3464 TTCGCCTGAAGAAGTTTCTGTTTGTAATTTGGCTTCGA-TTGCGT 3421 >seq3965 Length=13966 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 45212 CAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTC 45271 ||| || ||||| || |||||||| || || || ||||||||||| |||| ||| Sbjct 1007 CAAGCGCTGCTGATCTGGCGGAATCCCCTCCTTGTCTTGAATTTTGGCCTTGACATTTTC 1066 Query 45272 TACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAA 45331 | ||||| || | ||| ||||| ||||||| || || || |||| ||| || ||||| Sbjct 1067 AATCGTGTCAGATGCCTCAACTTCAAGAGTAATAGTCTTTCCAGTTAAAGTCTTGACAAA 1126 Query 45332 AATTTGCAT 45340 |||||||| Sbjct 1127 GATTTGCAT 1135 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 45216 CGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACG 45275 || |||||||| || ||||| || ||||| ||||||||||| ||||| ||| | Sbjct 1281 CGCTGCTGGTCTGGTGGAATCCCCTCTTTGTCTTGAATTTTGGCTTTGACGTTTTCAATC 1340 Query 45276 GTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATT 45335 || || || | ||| ||||||||||| | || ||||| || | || || || |||||| Sbjct 1341 GTATCCGATGCCTCAACTTCGAGAGTTATAGTCTTGCCTGTCAACGTCTTAACGAAAATT 1400 Query 45336 TGCAT 45340 ||||| Sbjct 1401 TGCAT 1405 >seq22378 Length=3416 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 45216 CGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACG 45275 || |||||||| || ||||| || ||||| ||||||||||| ||||| ||| | Sbjct 1542 CGCTGCTGGTCTGGTGGAATCCCCTCTTTGTCTTGAATTTTGGCTTTGACGTTTTCAATC 1601 Query 45276 GTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATT 45335 || || || | ||| ||||||||||| | || ||||| || | || || || |||||| Sbjct 1602 GTATCCGATGCCTCAACTTCGAGAGTTATAGTCTTGCCTGTCAACGTCTTAACGAAAATT 1661 Query 45336 TGCAT 45340 ||||| Sbjct 1662 TGCAT 1666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451826122096360