Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq19449 123 6e-23 seq7966 123 6e-23 seq8650 120 7e-22 seq10902 111 4e-19 seq27424 102 2e-16 seq18458 86.0 1e-11 seq16244 86.0 1e-11 seq6254 86.0 1e-11 seq5142 86.0 1e-11 seq3965 86.0 1e-11 seq2634 86.0 1e-11 seq695 86.0 1e-11 >seq19449 Length=4096 Score = 123 bits (136), Expect = 6e-23 Identities = 133/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 199451 TTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGC 199510 |||||||||||||| || | ||||| |||| |||||| || |||||||||||||| ||| Sbjct 1019 TTGTAGTCAGCCAACGTACGACCATCCTCCAACTGCTTCCCTGCGAAGATGAGACGTTGC 960 Query 199511 TGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCT 199570 || ||||| || || || |||||| ||||| ||| || |||| |||||| Sbjct 959 TGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCC 900 Query 199571 GTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | || |||||||| ||||||||||| || ||||| ||||| ||||| | ||| Sbjct 899 GACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTG 844 >seq7966 Length=9287 Score = 123 bits (136), Expect = 6e-23 Identities = 133/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 199451 TTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGC 199510 |||||||||||||| || | ||||| |||| ||||| || |||||||||||||| ||| Sbjct 5159 TTGTAGTCAGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGACGTTGC 5218 Query 199511 TGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCT 199570 || ||||| || || || |||||| ||||| ||| || ||||| |||||| Sbjct 5219 TGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCC 5278 Query 199571 GTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | || |||||||| ||||||||||| || ||||| ||||| ||||| | ||| Sbjct 5279 GACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTG 5334 >seq8650 Length=8768 Score = 120 bits (132), Expect = 7e-22 Identities = 132/176 (75%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 199451 TTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGC 199510 |||||||| ||||| || | ||||| |||| ||||| || |||||||||||||| ||| Sbjct 4684 TTGTAGTCTGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGACGTTGC 4625 Query 199511 TGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCT 199570 || ||||| || || || |||||| ||||| ||| || ||||| |||||| Sbjct 4624 TGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCC 4565 Query 199571 GTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | || |||||||| ||||||||||| || ||||| ||||| ||||| | ||| Sbjct 4564 GACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTG 4509 Score = 96.9 bits (106), Expect = 8e-15 Identities = 112/150 (75%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 199451 TTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGC 199510 |||||||| ||||| || | ||||| |||| ||||| || |||||||||||||| ||| Sbjct 5064 TTGTAGTCTGCCAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGACGTTGC 5005 Query 199511 TGG-TCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTC 199569 ||| ||||| || || || |||||| ||||| ||| || ||||| |||||| Sbjct 5004 TGGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTC 4945 Query 199570 TGTTGTTTCTACATCCAACGTGATCGTCTT 199599 | || |||||||| ||||||||||| Sbjct 4944 CGACTGCTCCACATCCAAGGTGATCGTCTT 4915 >seq10902 Length=7311 Score = 111 bits (122), Expect = 4e-19 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 199451 TTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGC 199510 |||||||| ||||| || | ||||| |||| || || || |||||||| ||||| ||| Sbjct 5976 TTGTAGTCGGCCAACGTACGACCATCCTCCAATTGTTTCCCTGCGAAGATTAGACGTTGC 5917 Query 199511 TGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCT 199570 || ||||| || || || |||||| ||||| ||| || ||||| |||||| Sbjct 5916 TGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCC 5857 Query 199571 GTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | || |||||||| ||||||||||| || ||||| ||||| ||||| | ||| Sbjct 5856 GACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTG 5801 >seq27424 Length=2520 Score = 102 bits (112), Expect = 2e-16 Identities = 130/178 (73%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 199451 TTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGC 199510 |||||||| | || || | ||||| |||| ||||| || |||||||||||||| ||| Sbjct 373 TTGTAGTCGGATAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGACGTTGC 432 Query 199511 TGGTCC--GGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGT 199568 || ||| || || || || |||||| ||||| ||| || ||||| ||||| Sbjct 433 TGCTCCCGGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGATGGTGT 492 Query 199569 CTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | | || |||||||| ||||||||||| || ||||| ||||| ||||| | ||| Sbjct 493 CCGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACTTG 550 >seq18458 Length=4373 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || ||| | ||| || || ||||||||||||| |||||||||||| | ||| Sbjct 3910 CGAAGACGCAAGACCAAGTGAAGCGTGGACTCCTTTTGGATGTTGTAGTCAGCGAGAGTG 3969 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGAT 199500 | ||||| || |||||||| || |||||||| Sbjct 3970 CGACCATCCTCAAGCTGCTTGCCAGCGAAGAT 4001 >seq16244 Length=5026 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 |||||||| || || ||| | || |||||| | ||| | |||||||| ||| ||||||| Sbjct 35 ATCTTCGCTGGCAAACAGCTTGAGGATGGACGTACTCTTGCCGATTATAACATCCAGAAG 94 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 || || ||||||||||| |||||| | ||||| Sbjct 95 GAATCGACTCTTCACCTCGTTTTGCGTCTTCG 126 >seq6254 Length=10896 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 |||||||| || || ||| | || |||||| | ||| | |||||||| ||| ||||||| Sbjct 10815 ATCTTCGCTGGCAAACAGCTTGAGGATGGACGTACTCTTGCCGATTATAACATCCAGAAG 10756 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 || || ||||||||||| |||||| | ||||| Sbjct 10755 GAATCGACTCTTCACCTCGTTTTGCGTCTTCG 10724 >seq5142 Length=12213 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 |||||||| || || ||| | || |||||| | ||| | |||||||| ||| ||||||| Sbjct 6858 ATCTTCGCTGGCAAACAGCTTGAGGATGGACGTACTCTTGCCGATTATAACATCCAGAAG 6799 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 || || ||||||||||| |||||| | ||||| Sbjct 6798 GAATCGACTCTTCACCTCGTTTTGCGTCTTCG 6767 >seq3965 Length=13966 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || ||| | ||| || || ||||||||||||| |||||||||||| | ||| Sbjct 872 CGAAGACGCAAGACCAAGTGAAGCGTGGACTCCTTTTGGATGTTGTAGTCAGCGAGAGTG 931 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGAT 199500 | ||||| || |||||||| || |||||||| Sbjct 932 CGACCATCCTCAAGCTGCTTGCCAGCGAAGAT 963 >seq2634 Length=16880 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 |||||||| || || ||| | || |||||| | ||| | |||||||| ||| ||||||| Sbjct 1316 ATCTTCGCTGGCAAACAGCTTGAGGATGGACGTACTCTTGCCGATTATAACATCCAGAAG 1257 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 || || ||||||||||| |||||| | ||||| Sbjct 1256 GAATCGACTCTTCACCTCGTTTTGCGTCTTCG 1225 >seq695 Length=26773 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 |||||||| || || ||| | || |||||| | ||| | |||||||| ||| ||||||| Sbjct 12773 ATCTTCGCTGGCAAACAGCTTGAGGATGGACGTACTCTTGCCGATTATAACATCCAGAAG 12832 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 || || ||||||||||| |||||| | ||||| Sbjct 12833 GAATCGACTCTTCACCTCGTTTTGCGTCTTCG 12864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178448196294847