Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29]
31,341 sequences; 235,798,407 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq27424 82.4 9e-11
seq22378 82.4 9e-11
seq19449 82.4 9e-11
seq3965 82.4 9e-11
seq567 82.4 9e-11
>seq27424
Length=2520
Score = 82.4 bits (90), Expect = 9e-11
Identities = 131/187 (70%), Gaps = 2/187 (1%)
Strand=Plus/Plus
Query 46409 TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAG 46468
|| |||||||||||||||| || || | || || | ||||| || ||||| || |
Sbjct 367 TGAATATTGTAGTCGGATAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGA 426
Query 46469 CGCTGCTGGT--CGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCA 46526
|| ||||| | ||| || | | |||||| ||| |||||| ||||| | | |
Sbjct 427 CGTTGCTGCTCCCGGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGA 486
Query 46527 CCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGA 46586
||||| | |||||||||| ||||| || || || || |||||||| |||||||
Sbjct 487 TGGTGTCCGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGA 546
Query 46587 TTTGCAT 46593
||||||
Sbjct 547 CTTGCAT 553
>seq22378
Length=3416
Score = 82.4 bits (90), Expect = 9e-11
Identities = 71/88 (81%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
|||||| |||| ||| | || ||||||||||||||||||||| | |||||||| |
Sbjct 1946 ACGCAAAACCAAATGGAGAGTCGACTCCTTTTGGATATTGTAGTCCGCAAGAGTGCGACC 2005
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATC 46465
||| ||||||||||| ||||| || |||
Sbjct 2006 GTCCTCGAGCTGCTTCCCGGCAAAGATC 2033
>seq19449
Length=4096
Score = 82.4 bits (90), Expect = 9e-11
Identities = 129/185 (70%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 46409 TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAG 46468
|| ||||||||||| | | || || | || || | |||||| || ||||| || |
Sbjct 1025 TGAATATTGTAGTCAGCCAACGTACGACCATCCTCCAACTGCTTCCCTGCGAAGATGAGA 966
Query 46469 CGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACC 46528
|| ||||| || | || | | |||||| ||| |||||| ||||| || | |
Sbjct 965 CGTTGCTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTCTCGATG 906
Query 46529 GTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATT 46588
||||| | |||||||||| ||||| || || || || |||||||| ||||||| |
Sbjct 905 GTGTCCGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACT 846
Query 46589 TGCAT 46593
|||||
Sbjct 845 TGCAT 841
>seq3965
Length=13966
Score = 82.4 bits (90), Expect = 9e-11
Identities = 71/88 (81%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
|||||| |||| ||| | || ||||||||||||||||||||| | |||||||| |
Sbjct 1686 ACGCAAAACCAAATGGAGAGTCGACTCCTTTTGGATATTGTAGTCCGCAAGAGTGCGACC 1745
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATC 46465
||| ||||||||||| ||||| || |||
Sbjct 1746 GTCCTCGAGCTGCTTCCCGGCAAAGATC 1773
>seq567
Length=28520
Score = 82.4 bits (90), Expect = 9e-11
Identities = 71/88 (81%), Gaps = 0/88 (0%)
Strand=Plus/Minus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
|||||| |||| ||| | || ||||||||||||||||||||| | |||||||| |
Sbjct 6780 ACGCAAAACCAAATGGAGAGTCGACTCCTTTTGGATATTGTAGTCCGCAAGAGTGCGACC 6721
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATC 46465
||| ||||||||||| ||||| || |||
Sbjct 6720 GTCCTCGAGCTGCTTACCGGCAAAGATC 6693
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565016960791320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |