Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq27424 82.4 9e-11 seq22378 82.4 9e-11 seq19449 82.4 9e-11 seq3965 82.4 9e-11 seq567 82.4 9e-11 >seq27424 Length=2520 Score = 82.4 bits (90), Expect = 9e-11 Identities = 131/187 (70%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 46409 TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAG 46468 || |||||||||||||||| || || | || || | ||||| || ||||| || | Sbjct 367 TGAATATTGTAGTCGGATAACGTACGACCATCCTCCAATTGCTTCCCTGCGAAGATGAGA 426 Query 46469 CGCTGCTGGT--CGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCA 46526 || ||||| | ||| || | | |||||| ||| |||||| ||||| | | | Sbjct 427 CGTTGCTGCTCCCGGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTTTCGA 486 Query 46527 CCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGA 46586 ||||| | |||||||||| ||||| || || || || |||||||| ||||||| Sbjct 487 TGGTGTCCGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGA 546 Query 46587 TTTGCAT 46593 |||||| Sbjct 547 CTTGCAT 553 >seq22378 Length=3416 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 |||||| |||| ||| | || ||||||||||||||||||||| | |||||||| | Sbjct 1946 ACGCAAAACCAAATGGAGAGTCGACTCCTTTTGGATATTGTAGTCCGCAAGAGTGCGACC 2005 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATC 46465 ||| ||||||||||| ||||| || ||| Sbjct 2006 GTCCTCGAGCTGCTTCCCGGCAAAGATC 2033 >seq19449 Length=4096 Score = 82.4 bits (90), Expect = 9e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 46409 TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAG 46468 || ||||||||||| | | || || | || || | |||||| || ||||| || | Sbjct 1025 TGAATATTGTAGTCAGCCAACGTACGACCATCCTCCAACTGCTTCCCTGCGAAGATGAGA 966 Query 46469 CGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACC 46528 || ||||| || | || | | |||||| ||| |||||| ||||| || | | Sbjct 965 CGTTGCTGCTCCGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTCTCGATG 906 Query 46529 GTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATT 46588 ||||| | |||||||||| ||||| || || || || |||||||| ||||||| | Sbjct 905 GTGTCCGACTGCTCCACATCCAAGGTGATCGTCTTCCCTGTGAGCGTTTTGACAAAGACT 846 Query 46589 TGCAT 46593 ||||| Sbjct 845 TGCAT 841 >seq3965 Length=13966 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 |||||| |||| ||| | || ||||||||||||||||||||| | |||||||| | Sbjct 1686 ACGCAAAACCAAATGGAGAGTCGACTCCTTTTGGATATTGTAGTCCGCAAGAGTGCGACC 1745 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATC 46465 ||| ||||||||||| ||||| || ||| Sbjct 1746 GTCCTCGAGCTGCTTCCCGGCAAAGATC 1773 >seq567 Length=28520 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 |||||| |||| ||| | || ||||||||||||||||||||| | |||||||| | Sbjct 6780 ACGCAAAACCAAATGGAGAGTCGACTCCTTTTGGATATTGTAGTCCGCAAGAGTGCGACC 6721 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATC 46465 ||| ||||||||||| ||||| || ||| Sbjct 6720 GTCCTCGAGCTGCTTACCGGCAAAGATC 6693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565016960791320