Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29]
31,341 sequences; 235,798,407 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq2550 105 8e-18
seq418 104 3e-17
seq26161 93.3 5e-14
seq27688 84.2 3e-11
seq3841 84.2 3e-11
>seq2550
Length=17099
Score = 105 bits (116), Expect = 8e-18
Identities = 156/217 (72%), Gaps = 3/217 (1%)
Strand=Plus/Plus
Query 16056 TTTCCCACG-GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGAC 16114
||||||| ||||||||||||||||| || | ||||| ||| || | || || |
Sbjct 11376 TTTCCCAATAGCATCAATCTCATCAATAAAAAGAATGCAAGGTGACTTCTTCCGTGCCAT 11435
Query 16115 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 16174
|||||| | ||||| ||||| || ||| ||||||||||||||||| | || | ||
Sbjct 11436 TTCAAACATATCCCTCACACGTCCGGGGCCAACACCAACAAACATCTCAAGGAATTCTGA 11495
Query 16175 GGC-GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 16233
| | | |||| | |||||| || ||||||| || || || | ||| |||||| | ||
Sbjct 11496 GCCAGAAACAGT-GATGAAAGGTACATTAGCCTCTCCTGCCGTTGCTTTGGCGAGTAAAG 11554
Query 16234 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 16270
| || || || ||||| ||| | ||| || |||||
Sbjct 11555 TTTTGCCAGTTCCTGGTGGACCAGTGAGAAGAGCACC 11591
>seq418
Length=30592
Score = 104 bits (114), Expect = 3e-17
Identities = 160/223 (72%), Gaps = 4/223 (2%)
Strand=Plus/Plus
Query 16050 CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTT-TCGCG 16108
|||| ||||| | ||||||||||||||||| || | ||||| || |||||| | ||
Sbjct 2734 CGTTTTTTTCCAATAGCATCAATCTCATCAATAAAAAGAATGCAAGG-TGATTTCTTTCG 2792
Query 16109 AGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 16168
|| | |||||| | ||||| ||||| | ||| ||||||||||||||||| | ||
Sbjct 2793 TGCCATTTCAAACATATCCCTCACACGTCCAGGGCCAACACCAACAAACATCTCAAGGAA 2852
Query 16169 GTTTGCGGC-GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGA 16227
| || | | | |||| | |||||| || ||||| | || || ||| | ||| ||| |
Sbjct 2853 TTCTGAGCCAGAAACAGT-GATGAAAGGTACATTCGCCTCTCCAGCAGTTGCTTTGGCAA 2911
Query 16228 GAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 16270
| | ||| ||||| || ||||| ||| | || || |||||
Sbjct 2912 GCAAAGTTTTACCAGTTCCTGGTGGACCAGTCAGAAGAGCACC 2954
>seq26161
Length=2716
Score = 93.3 bits (102), Expect = 5e-14
Identities = 153/217 (71%), Gaps = 3/217 (1%)
Strand=Plus/Plus
Query 16056 TTTCCCACG-GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGAC 16114
||||||| ||||||||||||||||| || | ||||| ||| || | || || |
Sbjct 1423 TTTCCCAATAGCATCAATCTCATCAATAAAAAGAATGCAAGGTGACTTCTTTCGTGCCAT 1482
Query 16115 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 16174
||| || | ||||| ||||| || ||| ||||||||||||||||| | ||| | ||
Sbjct 1483 TTCGAACATATCCCTCACACGTCCGGGGCCAACACCAACAAACATCTCAAGAAATTCTGA 1542
Query 16175 GGC-GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 16233
| | | |||| | ||| || || ||||| | || || ||| | ||| || || | ||
Sbjct 1543 GCCAGAAACAGT-GATAAAAGGTACATTCGCCTCTCCTGCAGTTGCTTTAGCAAGCAAAG 1601
Query 16234 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 16270
|||| || || ||||| || | ||| || |||||
Sbjct 1602 TCTTGCCAGTTCCTGGTGGGCCAGTGAGAAGAGCACC 1638
>seq27688
Length=2484
Score = 84.2 bits (92), Expect = 3e-11
Identities = 198/294 (67%), Gaps = 4/294 (1%)
Strand=Plus/Plus
Query 102126 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATAC-AAAGTCGCGTTCCTTTGCTGAGCG 102184
|| ||||| ||||||||| | ||| || || |||| || ||| |||| ||| ||
Sbjct 165 AAAAAAGCTGATTGGGCTCTTCGTTGGACTGCTAGTAAAGAAGC-TTCATTTGGTGAACG 223
Query 102185 ACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC-GCTATTT 102243
||| | || ||||| ||||||||||| ||||||||||| || ||| || ||||
Sbjct 224 TCTCATTGCTTTTGCCGCAGTTGAGGGTATATTCTTCTCTGG-AAGTTTTGCTGCAATTT 282
Query 102244 ATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTC 102303
|||||| ||||| || ||| | ||||| || || || || | || ||||
Sbjct 283 TTTGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAATTTCTC 342
Query 102304 GTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTCAAATTATTGCGTATTAAAC 102363
|||| || ||||| || | ||| ||||| ||||||| || ||| || |||||
Sbjct 343 GTGATGAAGGACTTCATCGAGATTTTGCTTGTTTACTTTTCCAACATTTGAATAATAAAC 402
Query 102364 CAACGACTGAGACTATTCATTCTATTGTTAAGGAAGCCGTTGAGATTGAGAAGG 102417
||| | ||| |||| | || || || || ||||| ||||| ||||
Sbjct 403 CAAATAATGAACGTATTGAGGAAATAATTCGAGAGGCTGTTGATATTGAAAAGG 456
>seq3841
Length=14205
Score = 84.2 bits (92), Expect = 3e-11
Identities = 126/179 (70%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 176891 GCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCA 176950
||||| | |||||| | ||| ||||||||||| || ||||| || ||| |||||
Sbjct 9948 GCATCTCTAACATTTAAAAGCTTTCCACGAAGAGGAAAAACACCATAAAAATCACGACCG 10007
Query 176951 ACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGT 177010
| || | ||| ||||| || | ||||| || ||||| || || || | |||||
Sbjct 10008 ATAACTCCCAAACCAGCAACAGCCAAAGTTTTGGCTGAATCTCCTTCAGTTAGAATGAGC 10067
Query 177011 GTACACTTGCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAATACC 177069
||||| || | ||| | || || || | ||||||||| |||||||||| || |||
Sbjct 10068 GTACATTTACGAGAATTACGAGTTCCAGCTTCGTTCGCATCTTCCAATTTGGCAACACC 10126
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620499216405520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |