Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq27688 118 1e-21 seq27347 118 1e-21 seq3049 118 1e-21 seq2786 118 1e-21 seq13787 114 2e-20 seq2550 91.5 2e-13 seq418 87.8 2e-12 seq26161 82.4 9e-11 >seq27688 Length=2484 Score = 118 bits (130), Expect = 1e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 119496 GCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCA 119555 ||||| ||| ||||||| |||||||| ||||| || | |||||||| |||||| Sbjct 370 GCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGTGTCAGTCCA 311 Query 119556 GGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATG 119615 ||||| | || | ||||||||||||||| || ||| |||||||||||| ||||| || Sbjct 310 GGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAAGAATATA 251 Query 119616 CCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||| || ||| ||||| | ||||| ||| |||| Sbjct 250 CCCTCAACTGCGGCAAAAGCAATGAGACGTTCACCAAA 213 >seq27347 Length=2531 Score = 118 bits (130), Expect = 1e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 119496 GCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCA 119555 ||||| ||| ||||||| |||||||| ||||| || | |||||||| |||||| Sbjct 195 GCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGTGTCAGTCCA 136 Query 119556 GGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATG 119615 ||||| | || | ||||||||||||||| || ||| |||||||||||| ||||| || Sbjct 135 GGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAAGAATATA 76 Query 119616 CCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||| || ||| ||||| | ||||| ||| |||| Sbjct 75 CCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCAAA 38 >seq3049 Length=15854 Score = 118 bits (130), Expect = 1e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 119496 GCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCA 119555 ||||| ||| ||||||| |||||||| ||||| || | |||||||| |||||| Sbjct 13784 GCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTTTGTGTCAGTCCA 13843 Query 119556 GGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATG 119615 ||||| | || | ||||||||||||||| || ||| |||||||||||| ||||| || Sbjct 13844 GGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAAGAATATA 13903 Query 119616 CCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||| || ||| ||||| | ||||| ||| |||| Sbjct 13904 CCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCAAA 13941 >seq2786 Length=16508 Score = 118 bits (130), Expect = 1e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 119496 GCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCA 119555 ||||| ||| ||||||| |||||||| ||||| || | |||||||| |||||| Sbjct 4178 GCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGTGTCAGTCCA 4237 Query 119556 GGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATG 119615 ||||| | || | ||||||||||||||| || ||| |||||||||||||||||| || Sbjct 4238 GGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAAAAGAATATA 4297 Query 119616 CCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||| || || ||||| | ||||| ||| |||| Sbjct 4298 CCCTCAACTGCTGCAAAAGCAATGAGACGTTCACCAAA 4335 >seq13787 Length=5932 Score = 114 bits (126), Expect = 2e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 119496 GCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCA 119555 ||||| ||| ||||||| |||||||| ||||| || | |||||||| |||||| Sbjct 761 GCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGTGTCAGTCCA 820 Query 119556 GGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATG 119615 ||||| || | ||||||||||||||| || ||| |||||||||||| ||||| || Sbjct 821 GGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAAGAATATA 880 Query 119616 CCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||| || ||| ||||| | ||||| ||| |||| Sbjct 881 CCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCAAA 918 >seq2550 Length=17099 Score = 91.5 bits (100), Expect = 2e-13 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 11668 CGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGT 11727 || || || || | ||| ||||||||||| || || | || || ||| || ||| Sbjct 11371 CGTTTTTTCCCAATAGCATCAATCTCATCAATAAAAAGAATGCAAGGTGACTTCTTCCGT 11430 Query 11728 GCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAG 11787 ||| ||| || | || | ||||| | |||||||| || |||||||||| ||| Sbjct 11431 GCCATTTCAAACATATCCCTCACACGTCCGGGGCCAACACCAACAAACATCTCAAGGAAT 11490 Query 11788 TTTGCGGCAG-AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAG 11846 | || | ||| |||| || ||||| || ||||||| ||| || || | ||| ||||| Sbjct 11491 TCTGAGCCAGAAACAGTG-ATGAAAGGTACATTAGCCTCTCCTGCCGTTGCTTTGGCGAG 11549 Query 11847 GAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCC 11888 | ||| || || || || |||| ||||| |||||| || || Sbjct 11550 TAAAGTTTTGCCAGTTCCTGGTGGACCAGTGAGAAGAGCACC 11591 >seq418 Length=30592 Score = 87.8 bits (96), Expect = 2e-12 Identities = 154/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 11668 CGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGT 11727 || || || || | ||| ||||||||||| || || | || || ||| || ||| Sbjct 2734 CGTTTTTTTCCAATAGCATCAATCTCATCAATAAAAAGAATGCAAGGTGATTTCTTTCGT 2793 Query 11728 GCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAG 11787 ||| ||| || | || | ||||| | |||||||| || |||||||||| ||| Sbjct 2794 GCCATTTCAAACATATCCCTCACACGTCCAGGGCCAACACCAACAAACATCTCAAGGAAT 2853 Query 11788 TTTGCGGCAG-AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAG 11846 | || | ||| |||| || ||||| || ||||| | ||| ||||| | ||| || || Sbjct 2854 TCTGAGCCAGAAACAGTG-ATGAAAGGTACATTCGCCTCTCCAGCAGTTGCTTTGGCAAG 2912 Query 11847 GAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCC 11888 | ||| ||||| || || |||| ||||| ||||| || || Sbjct 2913 CAAAGTTTTACCAGTTCCTGGTGGACCAGTCAGAAGAGCACC 2954 >seq26161 Length=2716 Score = 82.4 bits (90), Expect = 9e-11 Identities = 153/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 11668 CGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGT 11727 || || || || | ||| ||||||||||| || || | || || ||| || ||| Sbjct 1418 CGTTTTTTCCCAATAGCATCAATCTCATCAATAAAAAGAATGCAAGGTGACTTCTTTCGT 1477 Query 11728 GCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAG 11787 ||| |||||| | || | ||||| | |||||||| || |||||||||| || Sbjct 1478 GCCATTTCGAACATATCCCTCACACGTCCGGGGCCAACACCAACAAACATCTCAAGAAAT 1537 Query 11788 TTTGCGGCAG-AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAG 11846 | || | ||| |||| || || || || ||||| | ||| || || | ||| ||| || Sbjct 1538 TCTGAGCCAGAAACAGTG-ATAAAAGGTACATTCGCCTCTCCTGCAGTTGCTTTAGCAAG 1596 Query 11847 GAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCC 11888 | |||||| || || || |||| |||| |||||| || || Sbjct 1597 CAAAGTCTTGCCAGTTCCTGGTGGGCCAGTGAGAAGAGCACC 1638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588745261289800