Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2550 104 3e-17 seq418 102 1e-16 seq26161 89.7 6e-13 >seq2550 Length=17099 Score = 104 bits (114), Expect = 3e-17 Identities = 156/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 9363 TTTCCCACG-GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGAT 9421 ||||||| ||||||||||||||||| || | ||| || ||| || | || || || Sbjct 11376 TTTCCCAATAGCATCAATCTCATCAATAAAAAGAATGCAAGGTGACTTCTTCCGTGCCAT 11435 Query 9422 TTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9481 |||||| | ||| | || | | || ||| ||||||||||||||||| | || | || Sbjct 11436 TTCAAACATATCCCTCACACGTCCGGGGCCAACACCAACAAACATCTCAAGGAATTCTGA 11495 Query 9482 GGC-GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9540 | | | |||| | |||||| || ||||||| || || || | ||| |||||| | || Sbjct 11496 GCCAGAAACAGT-GATGAAAGGTACATTAGCCTCTCCTGCCGTTGCTTTGGCGAGTAAAG 11554 Query 9541 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCC 9578 | || || || ||||| ||| | ||| || |||||| Sbjct 11555 TTTTGCCAGTTCCTGGTGGACCAGTGAGAAGAGCACCC 11592 >seq418 Length=30592 Score = 102 bits (112), Expect = 1e-16 Identities = 160/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 9357 CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTT-TCGCG 9415 |||| ||||| | ||||||||||||||||| || | ||| || || |||||| | || Sbjct 2734 CGTTTTTTTCCAATAGCATCAATCTCATCAATAAAAAGAATGCAAGG-TGATTTCTTTCG 2792 Query 9416 GGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475 || |||||||| | ||| | || | | | ||| ||||||||||||||||| | || Sbjct 2793 TGCCATTTCAAACATATCCCTCACACGTCCAGGGCCAACACCAACAAACATCTCAAGGAA 2852 Query 9476 GTTTGCGGC-GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGA 9534 | || | | | |||| | |||||| || ||||| | || || ||| | ||| ||| | Sbjct 2853 TTCTGAGCCAGAAACAGT-GATGAAAGGTACATTCGCCTCTCCAGCAGTTGCTTTGGCAA 2911 Query 9535 GAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCC 9578 | | ||| ||||| || ||||| ||| | || || |||||| Sbjct 2912 GCAAAGTTTTACCAGTTCCTGGTGGACCAGTCAGAAGAGCACCC 2955 >seq26161 Length=2716 Score = 89.7 bits (98), Expect = 6e-13 Identities = 153/218 (70%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 9363 TTTCCCACG-GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGAT 9421 ||||||| ||||||||||||||||| || | ||| || ||| || | || || || Sbjct 1423 TTTCCCAATAGCATCAATCTCATCAATAAAAAGAATGCAAGGTGACTTCTTTCGTGCCAT 1482 Query 9422 TTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9481 ||| || | ||| | || | | || ||| ||||||||||||||||| | ||| | || Sbjct 1483 TTCGAACATATCCCTCACACGTCCGGGGCCAACACCAACAAACATCTCAAGAAATTCTGA 1542 Query 9482 GGC-GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9540 | | | |||| | ||| || || ||||| | || || ||| | ||| || || | || Sbjct 1543 GCCAGAAACAGT-GATAAAAGGTACATTCGCCTCTCCTGCAGTTGCTTTAGCAAGCAAAG 1601 Query 9541 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCC 9578 |||| || || ||||| || | ||| || |||||| Sbjct 1602 TCTTGCCAGTTCCTGGTGGGCCAGTGAGAAGAGCACCC 1639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589749667646840