Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29]
31,341 sequences; 235,798,407 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq2550 104 3e-17
seq418 102 1e-16
seq26161 89.7 6e-13
>seq2550
Length=17099
Score = 104 bits (114), Expect = 3e-17
Identities = 156/218 (72%), Gaps = 3/218 (1%)
Strand=Plus/Plus
Query 9363 TTTCCCACG-GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGAT 9421
||||||| ||||||||||||||||| || | ||| || ||| || | || || ||
Sbjct 11376 TTTCCCAATAGCATCAATCTCATCAATAAAAAGAATGCAAGGTGACTTCTTCCGTGCCAT 11435
Query 9422 TTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9481
|||||| | ||| | || | | || ||| ||||||||||||||||| | || | ||
Sbjct 11436 TTCAAACATATCCCTCACACGTCCGGGGCCAACACCAACAAACATCTCAAGGAATTCTGA 11495
Query 9482 GGC-GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9540
| | | |||| | |||||| || ||||||| || || || | ||| |||||| | ||
Sbjct 11496 GCCAGAAACAGT-GATGAAAGGTACATTAGCCTCTCCTGCCGTTGCTTTGGCGAGTAAAG 11554
Query 9541 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCC 9578
| || || || ||||| ||| | ||| || ||||||
Sbjct 11555 TTTTGCCAGTTCCTGGTGGACCAGTGAGAAGAGCACCC 11592
>seq418
Length=30592
Score = 102 bits (112), Expect = 1e-16
Identities = 160/224 (71%), Gaps = 4/224 (2%)
Strand=Plus/Plus
Query 9357 CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTT-TCGCG 9415
|||| ||||| | ||||||||||||||||| || | ||| || || |||||| | ||
Sbjct 2734 CGTTTTTTTCCAATAGCATCAATCTCATCAATAAAAAGAATGCAAGG-TGATTTCTTTCG 2792
Query 9416 GGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475
|| |||||||| | ||| | || | | | ||| ||||||||||||||||| | ||
Sbjct 2793 TGCCATTTCAAACATATCCCTCACACGTCCAGGGCCAACACCAACAAACATCTCAAGGAA 2852
Query 9476 GTTTGCGGC-GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGA 9534
| || | | | |||| | |||||| || ||||| | || || ||| | ||| ||| |
Sbjct 2853 TTCTGAGCCAGAAACAGT-GATGAAAGGTACATTCGCCTCTCCAGCAGTTGCTTTGGCAA 2911
Query 9535 GAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCC 9578
| | ||| ||||| || ||||| ||| | || || ||||||
Sbjct 2912 GCAAAGTTTTACCAGTTCCTGGTGGACCAGTCAGAAGAGCACCC 2955
>seq26161
Length=2716
Score = 89.7 bits (98), Expect = 6e-13
Identities = 153/218 (70%), Gaps = 3/218 (1%)
Strand=Plus/Plus
Query 9363 TTTCCCACG-GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGAT 9421
||||||| ||||||||||||||||| || | ||| || ||| || | || || ||
Sbjct 1423 TTTCCCAATAGCATCAATCTCATCAATAAAAAGAATGCAAGGTGACTTCTTTCGTGCCAT 1482
Query 9422 TTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9481
||| || | ||| | || | | || ||| ||||||||||||||||| | ||| | ||
Sbjct 1483 TTCGAACATATCCCTCACACGTCCGGGGCCAACACCAACAAACATCTCAAGAAATTCTGA 1542
Query 9482 GGC-GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9540
| | | |||| | ||| || || ||||| | || || ||| | ||| || || | ||
Sbjct 1543 GCCAGAAACAGT-GATAAAAGGTACATTCGCCTCTCCTGCAGTTGCTTTAGCAAGCAAAG 1601
Query 9541 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCC 9578
|||| || || ||||| || | ||| || ||||||
Sbjct 1602 TCTTGCCAGTTCCTGGTGGGCCAGTGAGAAGAGCACCC 1639
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589749667646840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |