Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq9384 89.7 6e-13 seq10602 84.2 3e-11 >seq9384 Length=8221 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 158560 GGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAA 158619 || |||| || || | ||| | || || ||||||||||||||||| ||||||| ||| Sbjct 5942 GGAAATATTGCTTATCGTTTAACTCTCCAAACTAGAGAGCAGCATATTCGAAGAGATAAA 6001 Query 158620 GCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTG 158668 |||||| ||| || ||||| || |||||||| | |||||||| |||| Sbjct 6002 GCAACCTCTAATATTTGCACTGCCCAAGCACTTCCTGCTAATATTTCTG 6050 >seq10602 Length=7473 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 158560 GGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAA 158619 || |||| || || | ||| | || || ||||||||||||||||| ||||||| ||| Sbjct 440 GGAAATATTGCTTATCGTTTAACTCTCCAAACTAGAGAGCAGCATATTCGAAGAGATAAA 499 Query 158620 GCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTG 158668 |||||| || || ||||| || |||||||| | |||||||| |||| Sbjct 500 GCAACCTCCAATATTTGCACTGCCCAAGCACTTCCTGCTAATATTTCTG 548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587820823591760