Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_015323.1 Length=45667 Score E Sequences producing significant alignments: (Bits) Value seq8056 87.8 5e-13 seq14569 82.4 2e-11 >seq8056 Length=9219 Score = 87.8 bits (96), Expect = 5e-13 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 991 AGAATCGCTCCTCGCTCGGGATTGGCTGCAAAGTTCTTTATAGATGTGGGGGCGGGTGTG 1050 ||||||||||| || || ||| | ||| |||| |||||| |||||||| || ||||| Sbjct 2304 AGAATCGCTCCACGTTCTGGACTCGCTTCAAAAAACTTTATTGATGTGGGTGCTGGTGTA 2245 Query 1051 ATAGATGCTGATTATCGCGGTGAAGTGAAGGTGCTCTTGTTCAATTTTTCG 1101 || ||| | |||||||| || ||| | ||||| || | ||||| |||||| Sbjct 2244 ATCGATCCGGATTATCGTGGAGAACTTAAGGTTCTGCTTTTCAACTTTTCG 2194 >seq14569 Length=5618 Score = 82.4 bits (90), Expect = 2e-11 Identities = 86/112 (77%), Gaps = 1/112 (1%) Strand=Plus/Plus Query 991 AGAATCGCTCCTCGCTCGGGATTGGCTGC-AAAGTTCTTTATAGATGTGGGGGCGGGTGT 1049 ||||||||||| || || ||| | ||| | ||| |||||| |||||||| || ||||| Sbjct 3389 AGAATCGCTCCACGTTCTGGACTCGCTTCAAAAAAACTTTATTGATGTGGGTGCTGGTGT 3448 Query 1050 GATAGATGCTGATTATCGCGGTGAAGTGAAGGTGCTCTTGTTCAATTTTTCG 1101 || ||| | |||||||| || ||| | ||||| || | ||||| |||||| Sbjct 3449 AATCGATCCGGATTATCGTGGAGAACTTAAGGTTCTGCTTTTCAACTTTTCG 3500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145958457777418