Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq18744 87.8 2e-12 seq8605 87.8 2e-12 seq55 84.2 3e-11 >seq18744 Length=4294 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/188 (71%), Gaps = 6/188 (3%) Strand=Plus/Plus Query 182871 TGCGAAATGGAGATTGGGTTCTCTTAAATCGTCAACCAACATTACATAAACCTTCTATGC 182930 ||||| |||| || || |||| |||||||||||||||||||| ||| || ||| Sbjct 1533 TGCGAGATGGCGACATTATTGTCTTTAATCGTCAACCAACATTACACAAAATGTCAATGA 1592 Query 182931 AAGCATTTATAGT---AGTTATTATTGATGGTAAAACTTTAAGGATGAATTTAGCCATGG 182987 | | || | | |||| || | |||| ||||| | |||||||| | | Sbjct 1593 TGGGACATAGAATTAAAGTTCTTCCT--TGGT-CTACTTTTCGTATGAATTTGTCTGTTA 1649 Query 182988 CTAAAGCTTACAATGCAGATTTTGATGGAGATGAAATGAATTTACATGTTCCTCAGTCGT 183047 | | | |||| ||||| |||||||||||||||||||||||||||||| | || || |||| Sbjct 1650 CAACACCTTATAATGCTGATTTTGATGGAGATGAAATGAATTTACATTTACCGCAATCGT 1709 Query 183048 ATGAAGCT 183055 ||| || Sbjct 1710 TGGAAACT 1717 >seq8605 Length=8806 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/188 (71%), Gaps = 6/188 (3%) Strand=Plus/Plus Query 182871 TGCGAAATGGAGATTGGGTTCTCTTAAATCGTCAACCAACATTACATAAACCTTCTATGC 182930 ||||| |||| || || |||| |||||||||||||||||||| ||| || ||| Sbjct 2901 TGCGAGATGGCGACATTATTGTCTTTAATCGTCAACCAACATTACACAAAATGTCAATGA 2960 Query 182931 AAGCATTTATAGT---AGTTATTATTGATGGTAAAACTTTAAGGATGAATTTAGCCATGG 182987 | | || | | |||| || | |||| ||||| | |||||||| | | Sbjct 2961 TGGGACATAGAATTAAAGTTCTTCCT--TGGT-CTACTTTTCGTATGAATTTGTCTGTTA 3017 Query 182988 CTAAAGCTTACAATGCAGATTTTGATGGAGATGAAATGAATTTACATGTTCCTCAGTCGT 183047 | | | |||| ||||| |||||||||||||||||||||||||||||| | || || |||| Sbjct 3018 CAACACCTTATAATGCTGATTTTGATGGAGATGAAATGAATTTACATTTACCGCAATCGT 3077 Query 183048 ATGAAGCT 183055 ||| || Sbjct 3078 TGGAAACT 3085 >seq55 Length=48044 Score = 84.2 bits (92), Expect = 3e-11 Identities = 133/188 (71%), Gaps = 6/188 (3%) Strand=Plus/Plus Query 182871 TGCGAAATGGAGATTGGGTTCTCTTAAATCGTCAACCAACATTACATAAACCTTCTATGC 182930 ||||| |||| || || |||| |||||||||||||||||||| ||| || ||| Sbjct 29727 TGCGAGATGGCGACATTATTGTCTTTAATCGTCAACCAACATTACACAAAATGTCAATGA 29786 Query 182931 AAGCATTTATAGT---AGTTATTATTGATGGTAAAACTTTAAGGATGAATTTAGCCATGG 182987 | | || | | |||| || | |||| ||||| | |||||||| | | Sbjct 29787 TGGGACATAGAATTAAAGTTCTTCCT--TGGT-CTACTTTTCGTATGAATTTGTCTGTTA 29843 Query 182988 CTAAAGCTTACAATGCAGATTTTGATGGAGATGAAATGAATTTACATGTTCCTCAGTCGT 183047 | | | |||| ||||| |||||||||||||||||||||||||| ||| | || || |||| Sbjct 29844 CAACACCTTATAATGCTGATTTTGATGGAGATGAAATGAATTTGCATTTACCGCAATCGT 29903 Query 183048 ATGAAGCT 183055 ||| || Sbjct 29904 TGGAAACT 29911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658145262316360