Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29]
31,341 sequences; 235,798,407 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq2786 140 4e-28
seq3049 136 5e-27
seq13787 111 2e-19
seq14353 91.5 2e-13
seq5989 91.5 2e-13
seq8535 87.8 2e-12
seq8325 82.4 9e-11
>seq2786
Length=16508
Score = 140 bits (154), Expect = 4e-28
Identities = 320/484 (66%), Gaps = 51/484 (11%)
Strand=Plus/Plus
Query 37107 ACAGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTA 37166
||||| ||| || ||| | ||||| ||| | | |||| || || |||| ||
Sbjct 4106 ACAGCCTCTCGAATTATTTCCTCAATACGTTCATTATTTGGTTTATTATTCAAATGTTGG 4165
Query 37167 AACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAA 37226
|| | |||||| |||||||| | ||| | |||||||||| | || |||||||||
Sbjct 4166 AAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTT 4225
Query 37227 AAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCA 37286
|| | ||| ||||| ||||| | ||| || | |||||| ||||| |||||| ||||
Sbjct 4226 TGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCA 4285
Query 37287 GAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAA--- 37343
|||||||| ||||| |||||||||||||| || | |||||| ||| || ||||
Sbjct 4286 GAAAAGAATATACCCTCAACTGCTGCAAAAGCAATGAGACGTTCACCAAA---TGAAGCT 4342
Query 37344 -CTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTT------AACACATTC 37396
|| || | || | |||| | |||||| || ||| || | || ||||
Sbjct 4343 TCTTTACT-AGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAATTC 4401
Query 37397 AATTGT----TTCAA-----TTG--CTTTTAAGAGAAAGtttttttCTTCA-CT------ 37438
| | | || || ||| || |||| | ||| || |||| || | ||
Sbjct 4402 GAATATAGCATTAAATAACTTTGAACTATTAAAAAAAATTTATTTTTTTAATCTAAAAAA 4461
Query 37439 -------------------ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAG 37479
|||| | |||||||||||||||| | ||||||||| |
Sbjct 4462 GGAAATACCGTTCAATTGGATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTG 4521
Query 37480 AGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAA 37539
| ||||||||||||||||| || ||||| ||||||||||| | ||| || | || |||||
Sbjct 4522 AATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCCTCTGGTATTTGAA 4581
Query 37540 CATC 37543
| ||
Sbjct 4582 CTTC 4585
>seq3049
Length=15854
Score = 136 bits (150), Expect = 5e-27
Identities = 317/478 (66%), Gaps = 45/478 (9%)
Strand=Plus/Plus
Query 37107 ACAGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTA 37166
||||| ||| || ||| | ||||| ||| | | |||| || || |||| ||
Sbjct 13712 ACAGCCTCTCGAATTATTTCCTCAATACGTTCATTATTTGGTTTATTATTCAAATGTTGG 13771
Query 37167 AACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAA 37226
|| | |||||| |||||||| | ||| | |||||||| | | || |||||||||
Sbjct 13772 AAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTT 13831
Query 37227 AAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCA 37286
|| | ||| ||||| ||||| | ||| || | |||||| ||||| |||||| ||||
Sbjct 13832 TGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCA 13891
Query 37287 GAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAA--- 37343
|| ||||| ||||| |||||||| ||||| || | ||||||| ||| || ||||
Sbjct 13892 GAGAAGAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCAAA---TGAAGCT 13948
Query 37344 -CTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAAT--- 37399
|| || | || | |||| | |||||| || ||| || | | | ||||
Sbjct 13949 TCTTTACT-AGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAACTC 14007
Query 37400 ---TGT----TTCAATTGCTTTTAAG-----AGAAAGtttttt--tCT------------ 37433
| | || || |||| || | ||| |||||| |||
Sbjct 14008 GAATATAGCATTAAACAACTTTGAACTATTAAAAAAATTTTTTAATCTAAAGAAGGAAAT 14067
Query 37434 -----TCACT---ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAA 37485
||| | |||| | |||||||||||||||| | ||||||||| || ||||
Sbjct 14068 ACCGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAA 14127
Query 37486 TATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATC 37543
||||||||||||| || ||||| ||||||||||| | |||||| | || |||||| ||
Sbjct 14128 TATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCTTCTGGTATTTGAACTTC 14185
>seq13787
Length=5932
Score = 111 bits (122), Expect = 2e-19
Identities = 312/485 (64%), Gaps = 52/485 (11%)
Strand=Plus/Plus
Query 37107 ACAGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTA 37166
||||| ||| || ||| | ||||| ||| | | |||| || || |||| |
Sbjct 689 ACAGCCTCTCGAATTATTTCCTCAATACGTTCATTATTTGGTTTATTATTCAAATGCTGG 748
Query 37167 AACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAA 37226
|| | || ||| |||||||| | ||| | |||||||||| | || |||||||||
Sbjct 749 AAAAGTAGACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTT 808
Query 37227 AAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCA 37286
|| | ||| ||||| |||| | ||| || | |||||| ||||| |||||| ||||
Sbjct 809 TGTGTCAGTCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCA 868
Query 37287 GAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAA--- 37343
|| ||||| ||||| ||||| || ||||| || | |||||| ||| || ||||
Sbjct 869 GAGAAGAATATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCAAA---TGAAGCT 925
Query 37344 -CTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAA------CACATTC 37396
|| || | || | |||| | |||||| || ||| || | || ||||
Sbjct 926 TCTTTACT-AGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAATTC 984
Query 37397 AATTGT----TTCAATTGCTTT-------TAAGAGAAAGtttttttCTTCACT------- 37438
| | | || ||| |||| ||| | ||| | ||||| || | |
Sbjct 985 GAATATAGCATTAAATAACTTTGAACTATTAAAAAAAAATATTTTTTTTTAATTTAAAGA 1044
Query 37439 --------------------ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCA 37478
|||| | |||||||||||||||| | |||||||||
Sbjct 1045 AGGAAATACCGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCT 1104
Query 37479 GAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGA 37538
|| ||||||||||||||||| || ||||| ||||||||||| | ||| || | || ||||
Sbjct 1105 GAATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCCTCTGGTATTTGA 1164
Query 37539 ACATC 37543
|| ||
Sbjct 1165 ACTTC 1169
>seq14353
Length=5696
Score = 91.5 bits (100), Expect = 2e-13
Identities = 80/100 (80%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 153292 TTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGCTAATA 153351
|||| |||| ||| ||||||| ||||| ||| ||||| | ||| |||| ||||||||
Sbjct 1331 TTTTGCATAGCAAACTTTGGATTGTTGACAATCAACATTTTTATTTAGGTTCTGCTAATA 1272
Query 153352 TGGATTGGAGATCACTAACTCAAGTAAAAGAATTAGGTAT 153391
|||||||| |||| ||||| |||| |||||||| || ||
Sbjct 1271 TGGATTGGCAATCATTAACTGAAGTTAAAGAATTGGGAAT 1232
>seq5989
Length=11212
Score = 91.5 bits (100), Expect = 2e-13
Identities = 110/150 (73%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 153292 TTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGCTAATA 153351
|||| |||| ||| ||||||| ||||| ||| ||||| | ||| |||| ||||||||
Sbjct 4631 TTTTGCATAGCAAACTTTGGATTGTTGACAATCAACATTTTTATTTAGGTTCTGCTAATA 4572
Query 153352 TGGATTGGAGATCACTAACTCAAGTAAAAGAATTAGGTATAACAATTTATAATAATTCTT 153411
|||||||| |||| |||| |||| |||||||| || || ||| | ||| ||| |
Sbjct 4571 TGGATTGGCAATCATTAACAGAAGTTAAAGAATTGGGAATTTTAATGAAAAATTGTTCCT 4512
Query 153412 GTATAGCTAATGAACTAACTAAAATATTTA 153441
| ||||| ||| | | ||||| ||||
Sbjct 4511 GCCTAGCTTGGGAATTTAACAAAATTTTTA 4482
>seq8535
Length=8866
Score = 87.8 bits (96), Expect = 2e-12
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 153292 TTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGCTAATA 153351
|||| |||| ||| ||||||| ||||| ||| ||||| | ||| |||| ||||||||
Sbjct 7757 TTTTGCATAGCAAACTTTGGATTGTTGACAATCAACATTTTTATTTAGGTTCTGCTAATA 7698
Query 153352 TGGATTGGAGATCACTAACTCAAGTAAAAGAATTAGGTATAACAATTTATAATAATTCTT 153411
|||||||| ||| |||| |||| |||||||| || || ||| | ||| ||| |
Sbjct 7697 TGGATTGGCAATCTTTAACAGAAGTTAAAGAATTGGGAATTTTAATGAAAAATTGTTCCT 7638
Query 153412 GTATAGCT 153419
|| |||||
Sbjct 7637 GTCTAGCT 7630
>seq8325
Length=9004
Score = 82.4 bits (90), Expect = 9e-11
Identities = 109/150 (73%), Gaps = 1/150 (1%)
Strand=Plus/Minus
Query 153292 TTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTAT-ATATAGGAAGTGCTAAT 153350
|||| |||| ||| ||||||| ||||| ||| ||||| | | || |||| |||||||
Sbjct 283 TTTTGCATAGCAAACTTTGGATTGTTGACAATCAACATTTTTTATTTAGGTTCTGCTAAT 224
Query 153351 ATGGATTGGAGATCACTAACTCAAGTAAAAGAATTAGGTATAACAATTTATAATAATTCT 153410
||||||||| |||| |||| |||| |||||||| || || ||| | ||| |||
Sbjct 223 ATGGATTGGCAATCATTAACAGAAGTTAAAGAATTGGGAATTTTAATGAAAAATTGTTCC 164
Query 153411 TGTATAGCTAATGAACTAACTAAAATATTT 153440
|| ||||| ||| | | ||||| |||
Sbjct 163 TGCCTAGCTTGGGAATTTAACAAAATTTTT 134
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592084752489640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |