Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq2786 140 4e-28 seq3049 136 5e-27 seq13787 111 2e-19 seq14353 91.5 2e-13 seq5989 91.5 2e-13 seq8535 87.8 2e-12 seq8325 82.4 9e-11 >seq2786 Length=16508 Score = 140 bits (154), Expect = 4e-28 Identities = 320/484 (66%), Gaps = 51/484 (11%) Strand=Plus/Plus Query 37107 ACAGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTA 37166 ||||| ||| || ||| | ||||| ||| | | |||| || || |||| || Sbjct 4106 ACAGCCTCTCGAATTATTTCCTCAATACGTTCATTATTTGGTTTATTATTCAAATGTTGG 4165 Query 37167 AACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAA 37226 || | |||||| |||||||| | ||| | |||||||||| | || ||||||||| Sbjct 4166 AAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTT 4225 Query 37227 AAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCA 37286 || | ||| ||||| ||||| | ||| || | |||||| ||||| |||||| |||| Sbjct 4226 TGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCA 4285 Query 37287 GAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAA--- 37343 |||||||| ||||| |||||||||||||| || | |||||| ||| || |||| Sbjct 4286 GAAAAGAATATACCCTCAACTGCTGCAAAAGCAATGAGACGTTCACCAAA---TGAAGCT 4342 Query 37344 -CTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTT------AACACATTC 37396 || || | || | |||| | |||||| || ||| || | || |||| Sbjct 4343 TCTTTACT-AGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAATTC 4401 Query 37397 AATTGT----TTCAA-----TTG--CTTTTAAGAGAAAGtttttttCTTCA-CT------ 37438 | | | || || ||| || |||| | ||| || |||| || | || Sbjct 4402 GAATATAGCATTAAATAACTTTGAACTATTAAAAAAAATTTATTTTTTTAATCTAAAAAA 4461 Query 37439 -------------------ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAG 37479 |||| | |||||||||||||||| | ||||||||| | Sbjct 4462 GGAAATACCGTTCAATTGGATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTG 4521 Query 37480 AGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAA 37539 | ||||||||||||||||| || ||||| ||||||||||| | ||| || | || ||||| Sbjct 4522 AATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCCTCTGGTATTTGAA 4581 Query 37540 CATC 37543 | || Sbjct 4582 CTTC 4585 >seq3049 Length=15854 Score = 136 bits (150), Expect = 5e-27 Identities = 317/478 (66%), Gaps = 45/478 (9%) Strand=Plus/Plus Query 37107 ACAGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTA 37166 ||||| ||| || ||| | ||||| ||| | | |||| || || |||| || Sbjct 13712 ACAGCCTCTCGAATTATTTCCTCAATACGTTCATTATTTGGTTTATTATTCAAATGTTGG 13771 Query 37167 AACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAA 37226 || | |||||| |||||||| | ||| | |||||||| | | || ||||||||| Sbjct 13772 AAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAATTCATTACTT 13831 Query 37227 AAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCA 37286 || | ||| ||||| ||||| | ||| || | |||||| ||||| |||||| |||| Sbjct 13832 TGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCA 13891 Query 37287 GAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAA--- 37343 || ||||| ||||| |||||||| ||||| || | ||||||| ||| || |||| Sbjct 13892 GAGAAGAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCAAA---TGAAGCT 13948 Query 37344 -CTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAAT--- 37399 || || | || | |||| | |||||| || ||| || | | | |||| Sbjct 13949 TCTTTACT-AGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAACTC 14007 Query 37400 ---TGT----TTCAATTGCTTTTAAG-----AGAAAGtttttt--tCT------------ 37433 | | || || |||| || | ||| |||||| ||| Sbjct 14008 GAATATAGCATTAAACAACTTTGAACTATTAAAAAAATTTTTTAATCTAAAGAAGGAAAT 14067 Query 37434 -----TCACT---ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAA 37485 ||| | |||| | |||||||||||||||| | ||||||||| || |||| Sbjct 14068 ACCGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAA 14127 Query 37486 TATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATC 37543 ||||||||||||| || ||||| ||||||||||| | |||||| | || |||||| || Sbjct 14128 TATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCTTCTGGTATTTGAACTTC 14185 >seq13787 Length=5932 Score = 111 bits (122), Expect = 2e-19 Identities = 312/485 (64%), Gaps = 52/485 (11%) Strand=Plus/Plus Query 37107 ACAGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTA 37166 ||||| ||| || ||| | ||||| ||| | | |||| || || |||| | Sbjct 689 ACAGCCTCTCGAATTATTTCCTCAATACGTTCATTATTTGGTTTATTATTCAAATGCTGG 748 Query 37167 AACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAA 37226 || | || ||| |||||||| | ||| | |||||||||| | || ||||||||| Sbjct 749 AAAAGTAGACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTT 808 Query 37227 AAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCA 37286 || | ||| ||||| |||| | ||| || | |||||| ||||| |||||| |||| Sbjct 809 TGTGTCAGTCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCA 868 Query 37287 GAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAA--- 37343 || ||||| ||||| ||||| || ||||| || | |||||| ||| || |||| Sbjct 869 GAGAAGAATATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCAAA---TGAAGCT 925 Query 37344 -CTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAA------CACATTC 37396 || || | || | |||| | |||||| || ||| || | || |||| Sbjct 926 TCTTTACT-AGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCAAATTC 984 Query 37397 AATTGT----TTCAATTGCTTT-------TAAGAGAAAGtttttttCTTCACT------- 37438 | | | || ||| |||| ||| | ||| | ||||| || | | Sbjct 985 GAATATAGCATTAAATAACTTTGAACTATTAAAAAAAAATATTTTTTTTTAATTTAAAGA 1044 Query 37439 --------------------ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCA 37478 |||| | |||||||||||||||| | ||||||||| Sbjct 1045 AGGAAATACCGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCT 1104 Query 37479 GAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGA 37538 || ||||||||||||||||| || ||||| ||||||||||| | ||| || | || |||| Sbjct 1105 GAATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCCTCTGGTATTTGA 1164 Query 37539 ACATC 37543 || || Sbjct 1165 ACTTC 1169 >seq14353 Length=5696 Score = 91.5 bits (100), Expect = 2e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 153292 TTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGCTAATA 153351 |||| |||| ||| ||||||| ||||| ||| ||||| | ||| |||| |||||||| Sbjct 1331 TTTTGCATAGCAAACTTTGGATTGTTGACAATCAACATTTTTATTTAGGTTCTGCTAATA 1272 Query 153352 TGGATTGGAGATCACTAACTCAAGTAAAAGAATTAGGTAT 153391 |||||||| |||| ||||| |||| |||||||| || || Sbjct 1271 TGGATTGGCAATCATTAACTGAAGTTAAAGAATTGGGAAT 1232 >seq5989 Length=11212 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 153292 TTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGCTAATA 153351 |||| |||| ||| ||||||| ||||| ||| ||||| | ||| |||| |||||||| Sbjct 4631 TTTTGCATAGCAAACTTTGGATTGTTGACAATCAACATTTTTATTTAGGTTCTGCTAATA 4572 Query 153352 TGGATTGGAGATCACTAACTCAAGTAAAAGAATTAGGTATAACAATTTATAATAATTCTT 153411 |||||||| |||| |||| |||| |||||||| || || ||| | ||| ||| | Sbjct 4571 TGGATTGGCAATCATTAACAGAAGTTAAAGAATTGGGAATTTTAATGAAAAATTGTTCCT 4512 Query 153412 GTATAGCTAATGAACTAACTAAAATATTTA 153441 | ||||| ||| | | ||||| |||| Sbjct 4511 GCCTAGCTTGGGAATTTAACAAAATTTTTA 4482 >seq8535 Length=8866 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 153292 TTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGCTAATA 153351 |||| |||| ||| ||||||| ||||| ||| ||||| | ||| |||| |||||||| Sbjct 7757 TTTTGCATAGCAAACTTTGGATTGTTGACAATCAACATTTTTATTTAGGTTCTGCTAATA 7698 Query 153352 TGGATTGGAGATCACTAACTCAAGTAAAAGAATTAGGTATAACAATTTATAATAATTCTT 153411 |||||||| ||| |||| |||| |||||||| || || ||| | ||| ||| | Sbjct 7697 TGGATTGGCAATCTTTAACAGAAGTTAAAGAATTGGGAATTTTAATGAAAAATTGTTCCT 7638 Query 153412 GTATAGCT 153419 || ||||| Sbjct 7637 GTCTAGCT 7630 >seq8325 Length=9004 Score = 82.4 bits (90), Expect = 9e-11 Identities = 109/150 (73%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 153292 TTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTAT-ATATAGGAAGTGCTAAT 153350 |||| |||| ||| ||||||| ||||| ||| ||||| | | || |||| ||||||| Sbjct 283 TTTTGCATAGCAAACTTTGGATTGTTGACAATCAACATTTTTTATTTAGGTTCTGCTAAT 224 Query 153351 ATGGATTGGAGATCACTAACTCAAGTAAAAGAATTAGGTATAACAATTTATAATAATTCT 153410 ||||||||| |||| |||| |||| |||||||| || || ||| | ||| ||| Sbjct 223 ATGGATTGGCAATCATTAACAGAAGTTAAAGAATTGGGAATTTTAATGAAAAATTGTTCC 164 Query 153411 TGTATAGCTAATGAACTAACTAAAATATTT 153440 || ||||| ||| | | ||||| ||| Sbjct 163 TGCCTAGCTTGGGAATTTAACAAAATTTTT 134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592084752489640