Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29]
31,341 sequences; 235,798,407 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq18228 84.2 2e-11
seq12969 84.2 2e-11
seq8275 84.2 2e-11
seq5333 84.2 2e-11
>seq18228
Length=4442
Score = 84.2 bits (92), Expect = 2e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 48642 CGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACA 48701
||||||||||||| |||| ||||||||| || |||||| || ||| | |
Sbjct 3088 CGCTGTTGATCCGGCGGAATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTTTCAATC 3029
Query 48702 GACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATC 48761
| || |||||||| || || | |||||| || ||||| || ||||| || |||||||||
Sbjct 3028 GTGTCAGACGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTTAAAGTCTTGACAAAAATC 2969
Query 48762 TGCATC 48767
||||||
Sbjct 2968 TGCATC 2963
>seq12969
Length=6291
Score = 84.2 bits (92), Expect = 2e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 48642 CGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACA 48701
||||||||||||| |||| ||||||||| || |||||| || ||| | |
Sbjct 1363 CGCTGTTGATCCGGCGGAATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTTTCAATC 1422
Query 48702 GACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATC 48761
| || |||||||| || || | |||||| || ||||| || ||||| || |||||||||
Sbjct 1423 GTGTCAGACGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTTAAAGTCTTGACAAAAATC 1482
Query 48762 TGCATC 48767
||||||
Sbjct 1483 TGCATC 1488
>seq8275
Length=9039
Score = 84.2 bits (92), Expect = 2e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 48642 CGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACA 48701
||||||||||||| |||| ||||||||| || |||||| || ||| | |
Sbjct 4090 CGCTGTTGATCCGGTGGAATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTTTCAATC 4031
Query 48702 GACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATC 48761
| || || ||||| || || | |||||| || ||||| || |||||||| |||||||||
Sbjct 4030 GTGTCGGATGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTTAAAGTTTTGACAAAAATC 3971
Query 48762 TGCATC 48767
||||||
Sbjct 3970 TGCATC 3965
>seq5333
Length=11984
Score = 84.2 bits (92), Expect = 2e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 48642 CGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACA 48701
||||||||||||| |||| ||||||||| || |||||| || ||| | |
Sbjct 8170 CGCTGTTGATCCGGCGGAATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTTTCAATC 8111
Query 48702 GACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATC 48761
| || || ||||| || || | |||||| || ||||| || |||||||| |||||||||
Sbjct 8110 GTGTCGGATGCCTCAACTTCAAGCGTAATAGTCTTTCCAGTTAAAGTTTTGACAAAAATC 8051
Query 48762 TGCATC 48767
||||||
Sbjct 8050 TGCATC 8045
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380792093860143
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |