Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20javanica_20[genbank_20GCA_5F900003945.1_202017-04-29] 31,341 sequences; 235,798,407 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq18228 84.2 2e-11 seq12969 84.2 2e-11 seq8275 84.2 2e-11 seq5333 84.2 2e-11 >seq18228 Length=4442 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 48642 CGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACA 48701 ||||||||||||| |||| ||||||||| || |||||| || ||| | | Sbjct 3088 CGCTGTTGATCCGGCGGAATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTTTCAATC 3029 Query 48702 GACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATC 48761 | || |||||||| || || | |||||| || ||||| || ||||| || ||||||||| Sbjct 3028 GTGTCAGACGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTTAAAGTCTTGACAAAAATC 2969 Query 48762 TGCATC 48767 |||||| Sbjct 2968 TGCATC 2963 >seq12969 Length=6291 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 48642 CGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACA 48701 ||||||||||||| |||| ||||||||| || |||||| || ||| | | Sbjct 1363 CGCTGTTGATCCGGCGGAATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTTTCAATC 1422 Query 48702 GACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATC 48761 | || |||||||| || || | |||||| || ||||| || ||||| || ||||||||| Sbjct 1423 GTGTCAGACGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTTAAAGTCTTGACAAAAATC 1482 Query 48762 TGCATC 48767 |||||| Sbjct 1483 TGCATC 1488 >seq8275 Length=9039 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 48642 CGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACA 48701 ||||||||||||| |||| ||||||||| || |||||| || ||| | | Sbjct 4090 CGCTGTTGATCCGGTGGAATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTTTCAATC 4031 Query 48702 GACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATC 48761 | || || ||||| || || | |||||| || ||||| || |||||||| ||||||||| Sbjct 4030 GTGTCGGATGCCTCAACTTCAAGCGTAATAGTCTTTCCGGTTAAAGTTTTGACAAAAATC 3971 Query 48762 TGCATC 48767 |||||| Sbjct 3970 TGCATC 3965 >seq5333 Length=11984 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 48642 CGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACA 48701 ||||||||||||| |||| ||||||||| || |||||| || ||| | | Sbjct 8170 CGCTGTTGATCCGGCGGAATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTTTCAATC 8111 Query 48702 GACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATC 48761 | || || ||||| || || | |||||| || ||||| || |||||||| ||||||||| Sbjct 8110 GTGTCGGATGCCTCAACTTCAAGCGTAATAGTCTTTCCAGTTAAAGTTTTGACAAAAATC 8051 Query 48762 TGCATC 48767 |||||| Sbjct 8050 TGCATC 8045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380792093860143